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MAGEA9 (MAGE family member A9)

Identity

Alias_namesMAGE9
melanoma antigen family A9
Alias_symbol (synonym)MGC8421
CT1.9
Other alias
HGNC (Hugo) MAGEA9
LocusID (NCBI) 4108
Atlas_Id 41252
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 148863600 and ends at 148869399 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEA9   6807
Cards
Entrez_Gene (NCBI)MAGEA9  4108  MAGE family member A9
AliasesCT1.9; MAGE9
GeneCards (Weizmann)MAGEA9
Ensembl hg19 (Hinxton)ENSG00000123584 [Gene_View]  chrX:148863600-148869399 [Contig_View]  MAGEA9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000123584 [Gene_View]  chrX:148863600-148869399 [Contig_View]  MAGEA9 [Vega]
ICGC DataPortalENSG00000123584
TCGA cBioPortalMAGEA9
AceView (NCBI)MAGEA9
Genatlas (Paris)MAGEA9
WikiGenes4108
SOURCE (Princeton)MAGEA9
Genetics Home Reference (NIH)MAGEA9
Genomic and cartography
GoldenPath hg19 (UCSC)MAGEA9  -     chrX:148863600-148869399 +  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAGEA9  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblMAGEA9 - Xq28 [CytoView hg19]  MAGEA9 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIMAGEA9 [Mapview hg19]  MAGEA9 [Mapview hg38]
OMIM300342   
Gene and transcription
Genbank (Entrez)AK292272 AK313321 AY310325 BC002351 BC098100
RefSeq transcript (Entrez)NM_005365
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)MAGEA9
Cluster EST : UnigeneHs.512582 [ NCBI ]
CGAP (NCI)Hs.512582
Alternative Splicing GalleryENSG00000123584
Gene ExpressionMAGEA9 [ NCBI-GEO ]   MAGEA9 [ EBI - ARRAY_EXPRESS ]   MAGEA9 [ SEEK ]   MAGEA9 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEA9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4108
GTEX Portal (Tissue expression)MAGEA9
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43362   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43362  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43362
Splice isoforms : SwissVarP43362
PhosPhoSitePlusP43362
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE_N    MAGEA9    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
Conserved Domain (NCBI)MAGEA9
DMDM Disease mutations4108
Blocks (Seattle)MAGEA9
SuperfamilyP43362
Human Protein AtlasENSG00000123584
Peptide AtlasP43362
HPRD02279
IPIIPI00018074   IPI00982450   IPI00847410   IPI00981800   IPI00984889   
Protein Interaction databases
DIP (DOE-UCLA)P43362
IntAct (EBI)P43362
FunCoupENSG00000123584
BioGRIDMAGEA9
STRING (EMBL)MAGEA9
ZODIACMAGEA9
Ontologies - Pathways
QuickGOP43362
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkMAGEA9
Atlas of Cancer Signalling NetworkMAGEA9
Wikipedia pathwaysMAGEA9
Orthology - Evolution
OrthoDB4108
GeneTree (enSembl)ENSG00000123584
Phylogenetic Trees/Animal Genes : TreeFamMAGEA9
HOVERGENP43362
HOGENOMP43362
Homologs : HomoloGeneMAGEA9
Homology/Alignments : Family Browser (UCSC)MAGEA9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEA9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEA9
dbVarMAGEA9
ClinVarMAGEA9
1000_GenomesMAGEA9 
Exome Variant ServerMAGEA9
ExAC (Exome Aggregation Consortium)MAGEA9 (select the gene name)
Genetic variants : HAPMAP4108
Genomic Variants (DGV)MAGEA9 [DGVbeta]
DECIPHER (Syndromes)X:148863600-148869399  ENSG00000123584
CONAN: Copy Number AnalysisMAGEA9 
Mutations
ICGC Data PortalMAGEA9 
TCGA Data PortalMAGEA9 
Broad Tumor PortalMAGEA9
OASIS PortalMAGEA9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMAGEA9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAGEA9
DgiDB (Drug Gene Interaction Database)MAGEA9
DoCM (Curated mutations)MAGEA9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEA9 (select a term)
intoGenMAGEA9
Cancer3DMAGEA9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300342   
Orphanet
MedgenMAGEA9
Genetic Testing Registry MAGEA9
NextProtP43362 [Medical]
TSGene4108
GENETestsMAGEA9
Huge Navigator MAGEA9 [HugePedia]
snp3D : Map Gene to Disease4108
BioCentury BCIQMAGEA9
ClinGenMAGEA9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4108
Chemical/Pharm GKB GenePA30553
Clinical trialMAGEA9
Miscellaneous
canSAR (ICR)MAGEA9 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEA9
EVEXMAGEA9
GoPubMedMAGEA9
iHOPMAGEA9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:08:16 CEST 2017

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