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MAGEA9B (MAGE family member A9B)

Identity

Alias_namesmelanoma antigen family A9B
Other alias-
HGNC (Hugo) MAGEA9B
LocusID (NCBI) 728269
Atlas_Id 49798
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 149581653 and ends at 149587459 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEA9B   31909
Cards
Entrez_Gene (NCBI)MAGEA9B  728269  MAGE family member A9B
Aliases
GeneCards (Weizmann)MAGEA9B
Ensembl hg19 (Hinxton)ENSG00000267978 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267978 [Gene_View]  ENSG00000267978 [Sequence]  chrX:149581653-149587459 [Contig_View]  MAGEA9B [Vega]
ICGC DataPortalENSG00000267978
TCGA cBioPortalMAGEA9B
AceView (NCBI)MAGEA9B
Genatlas (Paris)MAGEA9B
WikiGenes728269
SOURCE (Princeton)MAGEA9B
Genetics Home Reference (NIH)MAGEA9B
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEA9B  -     chrX:149581653-149587459 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEA9B  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblMAGEA9B - Xq28 [CytoView hg19]  MAGEA9B - Xq28 [CytoView hg38]
Mapping of homologs : NCBIMAGEA9B [Mapview hg19]  MAGEA9B [Mapview hg38]
OMIM300764   
Gene and transcription
Genbank (Entrez)AK292272 AK313321 AY310325 BC002351 BC098100
RefSeq transcript (Entrez)NM_001080790
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEA9B
Cluster EST : UnigeneHs.460974 [ NCBI ]
CGAP (NCI)Hs.460974
Alternative Splicing GalleryENSG00000267978
Gene ExpressionMAGEA9B [ NCBI-GEO ]   MAGEA9B [ EBI - ARRAY_EXPRESS ]   MAGEA9B [ SEEK ]   MAGEA9B [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEA9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728269
GTEX Portal (Tissue expression)MAGEA9B
Human Protein AtlasENSG00000267978-MAGEA9B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43362   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43362  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43362
Splice isoforms : SwissVarP43362
PhosPhoSitePlusP43362
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE    MAGE_N    MAGEA9    MHD_dom   
Domain families : Pfam (Sanger)MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam12440   
Domain families : Smart (EMBL)MAGE (SM01373)  MAGE_N (SM01392)  
Conserved Domain (NCBI)MAGEA9B
DMDM Disease mutations728269
Blocks (Seattle)MAGEA9B
SuperfamilyP43362
Human Protein Atlas [tissue]ENSG00000267978-MAGEA9B [tissue]
Peptide AtlasP43362
Protein Interaction databases
DIP (DOE-UCLA)P43362
IntAct (EBI)P43362
FunCoupENSG00000267978
BioGRIDMAGEA9B
STRING (EMBL)MAGEA9B
ZODIACMAGEA9B
Ontologies - Pathways
QuickGOP43362
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkMAGEA9B
Atlas of Cancer Signalling NetworkMAGEA9B
Wikipedia pathwaysMAGEA9B
Orthology - Evolution
OrthoDB728269
GeneTree (enSembl)ENSG00000267978
Phylogenetic Trees/Animal Genes : TreeFamMAGEA9B
HOVERGENP43362
HOGENOMP43362
Homologs : HomoloGeneMAGEA9B
Homology/Alignments : Family Browser (UCSC)MAGEA9B
Gene fusions - Rearrangements
Fusion : QuiverMAGEA9B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEA9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEA9B
dbVarMAGEA9B
ClinVarMAGEA9B
1000_GenomesMAGEA9B 
Exome Variant ServerMAGEA9B
ExAC (Exome Aggregation Consortium)ENSG00000267978
GNOMAD BrowserENSG00000267978
Varsome BrowserMAGEA9B
Genetic variants : HAPMAP728269
Genomic Variants (DGV)MAGEA9B [DGVbeta]
DECIPHERMAGEA9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEA9B 
Mutations
ICGC Data PortalMAGEA9B 
TCGA Data PortalMAGEA9B 
Broad Tumor PortalMAGEA9B
OASIS PortalMAGEA9B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMAGEA9B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAGEA9B
DgiDB (Drug Gene Interaction Database)MAGEA9B
DoCM (Curated mutations)MAGEA9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEA9B (select a term)
intoGenMAGEA9B
Cancer3DMAGEA9B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300764   
Orphanet
DisGeNETMAGEA9B
MedgenMAGEA9B
Genetic Testing Registry MAGEA9B
NextProtP43362 [Medical]
TSGene728269
GENETestsMAGEA9B
Target ValidationMAGEA9B
Huge Navigator MAGEA9B [HugePedia]
snp3D : Map Gene to Disease728269
BioCentury BCIQMAGEA9B
ClinGenMAGEA9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728269
Chemical/Pharm GKB GenePA145148473
Clinical trialMAGEA9B
Miscellaneous
canSAR (ICR)MAGEA9B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEA9B
EVEXMAGEA9B
GoPubMedMAGEA9B
iHOPMAGEA9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:18:28 CET 2018

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