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MAGEB1 (MAGE family member B1)

Identity

Alias_namesmelanoma antigen family B1
Alias_symbol (synonym)MAGEL1
MAGE-Xp
DAM10
MGC9322
CT3.1
Other alias
HGNC (Hugo) MAGEB1
LocusID (NCBI) 4112
Atlas_Id 41253
Location Xp21.2  [Link to chromosome band Xp21]
Location_base_pair Starts at 30261848 and ends at 30270155 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEB1   6808
Cards
Entrez_Gene (NCBI)MAGEB1  4112  MAGE family member B1
AliasesCT3.1; DAM10; MAGE-Xp; MAGEL1
GeneCards (Weizmann)MAGEB1
Ensembl hg19 (Hinxton)ENSG00000214107 [Gene_View]  chrX:30261848-30270155 [Contig_View]  MAGEB1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000214107 [Gene_View]  chrX:30261848-30270155 [Contig_View]  MAGEB1 [Vega]
ICGC DataPortalENSG00000214107
TCGA cBioPortalMAGEB1
AceView (NCBI)MAGEB1
Genatlas (Paris)MAGEB1
WikiGenes4112
SOURCE (Princeton)MAGEB1
Genetics Home Reference (NIH)MAGEB1
Genomic and cartography
GoldenPath hg19 (UCSC)MAGEB1  -     chrX:30261848-30270155 +  Xp21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAGEB1  -     Xp21.2   [Description]    (hg38-Dec_2013)
EnsemblMAGEB1 - Xp21.2 [CytoView hg19]  MAGEB1 - Xp21.2 [CytoView hg38]
Mapping of homologs : NCBIMAGEB1 [Mapview hg19]  MAGEB1 [Mapview hg38]
OMIM300097   
Gene and transcription
Genbank (Entrez)AK314977 BC013772 BU166425 CR541762 DB022312
RefSeq transcript (Entrez)NM_002363 NM_177404 NM_177415
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016336 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)MAGEB1
Cluster EST : UnigeneHs.73021 [ NCBI ]
CGAP (NCI)Hs.73021
Alternative Splicing GalleryENSG00000214107
Gene ExpressionMAGEB1 [ NCBI-GEO ]   MAGEB1 [ EBI - ARRAY_EXPRESS ]   MAGEB1 [ SEEK ]   MAGEB1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4112
GTEX Portal (Tissue expression)MAGEB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43366   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43366  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43366
Splice isoforms : SwissVarP43366
PhosPhoSitePlusP43366
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE_N    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
Conserved Domain (NCBI)MAGEB1
DMDM Disease mutations4112
Blocks (Seattle)MAGEB1
SuperfamilyP43366
Human Protein AtlasENSG00000214107
Peptide AtlasP43366
HPRD02108
IPIIPI00018080   
Protein Interaction databases
DIP (DOE-UCLA)P43366
IntAct (EBI)P43366
FunCoupENSG00000214107
BioGRIDMAGEB1
STRING (EMBL)MAGEB1
ZODIACMAGEB1
Ontologies - Pathways
QuickGOP43366
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMAGEB1
Atlas of Cancer Signalling NetworkMAGEB1
Wikipedia pathwaysMAGEB1
Orthology - Evolution
OrthoDB4112
GeneTree (enSembl)ENSG00000214107
Phylogenetic Trees/Animal Genes : TreeFamMAGEB1
HOVERGENP43366
HOGENOMP43366
Homologs : HomoloGeneMAGEB1
Homology/Alignments : Family Browser (UCSC)MAGEB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEB1
dbVarMAGEB1
ClinVarMAGEB1
1000_GenomesMAGEB1 
Exome Variant ServerMAGEB1
ExAC (Exome Aggregation Consortium)MAGEB1 (select the gene name)
Genetic variants : HAPMAP4112
Genomic Variants (DGV)MAGEB1 [DGVbeta]
DECIPHER (Syndromes)X:30261848-30270155  ENSG00000214107
CONAN: Copy Number AnalysisMAGEB1 
Mutations
ICGC Data PortalMAGEB1 
TCGA Data PortalMAGEB1 
Broad Tumor PortalMAGEB1
OASIS PortalMAGEB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEB1
DgiDB (Drug Gene Interaction Database)MAGEB1
DoCM (Curated mutations)MAGEB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEB1 (select a term)
intoGenMAGEB1
Cancer3DMAGEB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300097   
Orphanet
MedgenMAGEB1
Genetic Testing Registry MAGEB1
NextProtP43366 [Medical]
TSGene4112
GENETestsMAGEB1
Huge Navigator MAGEB1 [HugePedia]
snp3D : Map Gene to Disease4112
BioCentury BCIQMAGEB1
ClinGenMAGEB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4112
Chemical/Pharm GKB GenePA30554
Clinical trialMAGEB1
Miscellaneous
canSAR (ICR)MAGEB1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEB1
EVEXMAGEB1
GoPubMedMAGEB1
iHOPMAGEB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:14:11 CET 2017

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