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MAGEB10 (MAGE family member B10)

Identity

Alias_namesmelanoma antigen family B10
Alias_symbol (synonym)FLJ32965
Other alias-
HGNC (Hugo) MAGEB10
LocusID (NCBI) 139422
Atlas_Id 42939
Location Xp21.3  [Link to chromosome band Xp21]
Location_base_pair Starts at 27807990 and ends at 27823014 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IL1RAPL1 (Xp21.3) / MAGEB10 (Xp21.3)IL1RAPL1 Xp21.3 / MAGEB10 Xp21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEB10   25377
Cards
Entrez_Gene (NCBI)MAGEB10  139422  MAGE family member B10
Aliases
GeneCards (Weizmann)MAGEB10
Ensembl hg19 (Hinxton)ENSG00000177689 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177689 [Gene_View]  chrX:27807990-27823014 [Contig_View]  MAGEB10 [Vega]
ICGC DataPortalENSG00000177689
TCGA cBioPortalMAGEB10
AceView (NCBI)MAGEB10
Genatlas (Paris)MAGEB10
WikiGenes139422
SOURCE (Princeton)MAGEB10
Genetics Home Reference (NIH)MAGEB10
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEB10  -     chrX:27807990-27823014 +  Xp21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEB10  -     Xp21.3   [Description]    (hg19-Feb_2009)
EnsemblMAGEB10 - Xp21.3 [CytoView hg19]  MAGEB10 - Xp21.3 [CytoView hg38]
Mapping of homologs : NCBIMAGEB10 [Mapview hg19]  MAGEB10 [Mapview hg38]
OMIM300761   
Gene and transcription
Genbank (Entrez)AK057527 BC101307 BC101308 BC101309 BC101310
RefSeq transcript (Entrez)NM_182506
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEB10
Cluster EST : UnigeneHs.447363 [ NCBI ]
CGAP (NCI)Hs.447363
Alternative Splicing GalleryENSG00000177689
Gene ExpressionMAGEB10 [ NCBI-GEO ]   MAGEB10 [ EBI - ARRAY_EXPRESS ]   MAGEB10 [ SEEK ]   MAGEB10 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEB10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139422
GTEX Portal (Tissue expression)MAGEB10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LZ2
Splice isoforms : SwissVarQ96LZ2
PhosPhoSitePlusQ96LZ2
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE_N    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
Domain families : Smart (EMBL)MAGE (SM01373)  MAGE_N (SM01392)  
Conserved Domain (NCBI)MAGEB10
DMDM Disease mutations139422
Blocks (Seattle)MAGEB10
SuperfamilyQ96LZ2
Human Protein AtlasENSG00000177689
Peptide AtlasQ96LZ2
HPRD06554
IPIIPI00065430   
Protein Interaction databases
DIP (DOE-UCLA)Q96LZ2
IntAct (EBI)Q96LZ2
FunCoupENSG00000177689
BioGRIDMAGEB10
STRING (EMBL)MAGEB10
ZODIACMAGEB10
Ontologies - Pathways
QuickGOQ96LZ2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMAGEB10
Atlas of Cancer Signalling NetworkMAGEB10
Wikipedia pathwaysMAGEB10
Orthology - Evolution
OrthoDB139422
GeneTree (enSembl)ENSG00000177689
Phylogenetic Trees/Animal Genes : TreeFamMAGEB10
HOVERGENQ96LZ2
HOGENOMQ96LZ2
Homologs : HomoloGeneMAGEB10
Homology/Alignments : Family Browser (UCSC)MAGEB10
Gene fusions - Rearrangements
Fusion : MitelmanIL1RAPL1/MAGEB10 [Xp21.3/Xp21.3]  [t(X;X)(p21;p21)]  
Fusion: TCGAIL1RAPL1 Xp21.3 MAGEB10 Xp21.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEB10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEB10
dbVarMAGEB10
ClinVarMAGEB10
1000_GenomesMAGEB10 
Exome Variant ServerMAGEB10
ExAC (Exome Aggregation Consortium)MAGEB10 (select the gene name)
Genetic variants : HAPMAP139422
Genomic Variants (DGV)MAGEB10 [DGVbeta]
DECIPHERMAGEB10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEB10 
Mutations
ICGC Data PortalMAGEB10 
TCGA Data PortalMAGEB10 
Broad Tumor PortalMAGEB10
OASIS PortalMAGEB10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEB10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEB10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEB10
DgiDB (Drug Gene Interaction Database)MAGEB10
DoCM (Curated mutations)MAGEB10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEB10 (select a term)
intoGenMAGEB10
Cancer3DMAGEB10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300761   
Orphanet
MedgenMAGEB10
Genetic Testing Registry MAGEB10
NextProtQ96LZ2 [Medical]
TSGene139422
GENETestsMAGEB10
Target ValidationMAGEB10
Huge Navigator MAGEB10 [HugePedia]
snp3D : Map Gene to Disease139422
BioCentury BCIQMAGEB10
ClinGenMAGEB10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139422
Chemical/Pharm GKB GenePA134952121
Clinical trialMAGEB10
Miscellaneous
canSAR (ICR)MAGEB10 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEB10
EVEXMAGEB10
GoPubMedMAGEB10
iHOPMAGEB10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:16:55 CEST 2017

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