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MAGEB16 (MAGE family member B16)

Identity

Alias_namesmelanoma antigen family B, 16 (pseudogene)
melanoma antigen family B16
Other alias-
HGNC (Hugo) MAGEB16
LocusID (NCBI) 139604
Atlas_Id 45517
Location Xp21.1  [Link to chromosome band Xp21]
Location_base_pair Starts at 35816459 and ends at 35821852 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEB16   21188
Cards
Entrez_Gene (NCBI)MAGEB16  139604  MAGE family member B16
Aliases
GeneCards (Weizmann)MAGEB16
Ensembl hg19 (Hinxton)ENSG00000189023 [Gene_View]  chrX:35816459-35821852 [Contig_View]  MAGEB16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000189023 [Gene_View]  chrX:35816459-35821852 [Contig_View]  MAGEB16 [Vega]
ICGC DataPortalENSG00000189023
TCGA cBioPortalMAGEB16
AceView (NCBI)MAGEB16
Genatlas (Paris)MAGEB16
WikiGenes139604
SOURCE (Princeton)MAGEB16
Genetics Home Reference (NIH)MAGEB16
Genomic and cartography
GoldenPath hg19 (UCSC)MAGEB16  -     chrX:35816459-35821852 +  Xp21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAGEB16  -     Xp21.1   [Description]    (hg38-Dec_2013)
EnsemblMAGEB16 - Xp21.1 [CytoView hg19]  MAGEB16 - Xp21.1 [CytoView hg38]
Mapping of homologs : NCBIMAGEB16 [Mapview hg19]  MAGEB16 [Mapview hg38]
OMIM300762   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001099921
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)MAGEB16
Cluster EST : UnigeneHs.700562 [ NCBI ]
CGAP (NCI)Hs.700562
Alternative Splicing GalleryENSG00000189023
Gene ExpressionMAGEB16 [ NCBI-GEO ]   MAGEB16 [ EBI - ARRAY_EXPRESS ]   MAGEB16 [ SEEK ]   MAGEB16 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEB16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139604
GTEX Portal (Tissue expression)MAGEB16
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2A368   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2A368  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2A368
Splice isoforms : SwissVarA2A368
PhosPhoSitePlusA2A368
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE_N    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
Conserved Domain (NCBI)MAGEB16
DMDM Disease mutations139604
Blocks (Seattle)MAGEB16
SuperfamilyA2A368
Human Protein AtlasENSG00000189023
Peptide AtlasA2A368
IPIIPI00738845   IPI00923629   
Protein Interaction databases
DIP (DOE-UCLA)A2A368
IntAct (EBI)A2A368
FunCoupENSG00000189023
BioGRIDMAGEB16
STRING (EMBL)MAGEB16
ZODIACMAGEB16
Ontologies - Pathways
QuickGOA2A368
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMAGEB16
Atlas of Cancer Signalling NetworkMAGEB16
Wikipedia pathwaysMAGEB16
Orthology - Evolution
OrthoDB139604
GeneTree (enSembl)ENSG00000189023
Phylogenetic Trees/Animal Genes : TreeFamMAGEB16
HOVERGENA2A368
HOGENOMA2A368
Homologs : HomoloGeneMAGEB16
Homology/Alignments : Family Browser (UCSC)MAGEB16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEB16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEB16
dbVarMAGEB16
ClinVarMAGEB16
1000_GenomesMAGEB16 
Exome Variant ServerMAGEB16
ExAC (Exome Aggregation Consortium)MAGEB16 (select the gene name)
Genetic variants : HAPMAP139604
Genomic Variants (DGV)MAGEB16 [DGVbeta]
DECIPHER (Syndromes)X:35816459-35821852  ENSG00000189023
CONAN: Copy Number AnalysisMAGEB16 
Mutations
ICGC Data PortalMAGEB16 
TCGA Data PortalMAGEB16 
Broad Tumor PortalMAGEB16
OASIS PortalMAGEB16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEB16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEB16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAGEB16
DgiDB (Drug Gene Interaction Database)MAGEB16
DoCM (Curated mutations)MAGEB16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEB16 (select a term)
intoGenMAGEB16
Cancer3DMAGEB16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300762   
Orphanet
MedgenMAGEB16
Genetic Testing Registry MAGEB16
NextProtA2A368 [Medical]
TSGene139604
GENETestsMAGEB16
Huge Navigator MAGEB16 [HugePedia]
snp3D : Map Gene to Disease139604
BioCentury BCIQMAGEB16
ClinGenMAGEB16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139604
Chemical/Pharm GKB GenePA134922508
Clinical trialMAGEB16
Miscellaneous
canSAR (ICR)MAGEB16 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEB16
EVEXMAGEB16
GoPubMedMAGEB16
iHOPMAGEB16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:14:11 CET 2017

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