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MAGEB17 (MAGE family member B17)

Identity

Alias_namesmelanoma antigen family B, 17 (pseudogene)
melanoma antigen family B17
Other alias-
HGNC (Hugo) MAGEB17
LocusID (NCBI) 645864
Atlas_Id 43032
Location Xp22.2  [Link to chromosome band Xp22]
Location_base_pair Starts at 16167481 and ends at 16171393 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEB17   17418
Cards
Entrez_Gene (NCBI)MAGEB17  645864  MAGE family member B17
Aliases
GeneCards (Weizmann)MAGEB17
Ensembl hg19 (Hinxton)ENSG00000182798 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182798 [Gene_View]  chrX:16167481-16171393 [Contig_View]  MAGEB17 [Vega]
ICGC DataPortalENSG00000182798
TCGA cBioPortalMAGEB17
AceView (NCBI)MAGEB17
Genatlas (Paris)MAGEB17
WikiGenes645864
SOURCE (Princeton)MAGEB17
Genetics Home Reference (NIH)MAGEB17
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEB17  -     chrX:16167481-16171393 +  Xp22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEB17  -     Xp22.2   [Description]    (hg19-Feb_2009)
EnsemblMAGEB17 - Xp22.2 [CytoView hg19]  MAGEB17 - Xp22.2 [CytoView hg38]
Mapping of homologs : NCBIMAGEB17 [Mapview hg19]  MAGEB17 [Mapview hg38]
OMIM300763   
Gene and transcription
Genbank (Entrez)DV080535
RefSeq transcript (Entrez)NM_001277307
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEB17
Cluster EST : UnigeneHs.632792 [ NCBI ]
CGAP (NCI)Hs.632792
Alternative Splicing GalleryENSG00000182798
Gene ExpressionMAGEB17 [ NCBI-GEO ]   MAGEB17 [ EBI - ARRAY_EXPRESS ]   MAGEB17 [ SEEK ]   MAGEB17 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEB17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645864
GTEX Portal (Tissue expression)MAGEB17
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MXT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MXT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MXT2
Splice isoforms : SwissVarA8MXT2
PhosPhoSitePlusA8MXT2
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE_N    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
Domain families : Smart (EMBL)MAGE (SM01373)  MAGE_N (SM01392)  
Conserved Domain (NCBI)MAGEB17
DMDM Disease mutations645864
Blocks (Seattle)MAGEB17
SuperfamilyA8MXT2
Human Protein AtlasENSG00000182798
Peptide AtlasA8MXT2
IPIIPI00046955   
Protein Interaction databases
DIP (DOE-UCLA)A8MXT2
IntAct (EBI)A8MXT2
FunCoupENSG00000182798
BioGRIDMAGEB17
STRING (EMBL)MAGEB17
ZODIACMAGEB17
Ontologies - Pathways
QuickGOA8MXT2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMAGEB17
Atlas of Cancer Signalling NetworkMAGEB17
Wikipedia pathwaysMAGEB17
Orthology - Evolution
OrthoDB645864
GeneTree (enSembl)ENSG00000182798
Phylogenetic Trees/Animal Genes : TreeFamMAGEB17
HOVERGENA8MXT2
HOGENOMA8MXT2
Homologs : HomoloGeneMAGEB17
Homology/Alignments : Family Browser (UCSC)MAGEB17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEB17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEB17
dbVarMAGEB17
ClinVarMAGEB17
1000_GenomesMAGEB17 
Exome Variant ServerMAGEB17
ExAC (Exome Aggregation Consortium)MAGEB17 (select the gene name)
Genetic variants : HAPMAP645864
Genomic Variants (DGV)MAGEB17 [DGVbeta]
DECIPHERMAGEB17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEB17 
Mutations
ICGC Data PortalMAGEB17 
TCGA Data PortalMAGEB17 
Broad Tumor PortalMAGEB17
OASIS PortalMAGEB17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEB17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEB17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAGEB17
DgiDB (Drug Gene Interaction Database)MAGEB17
DoCM (Curated mutations)MAGEB17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEB17 (select a term)
intoGenMAGEB17
Cancer3DMAGEB17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300763   
Orphanet
MedgenMAGEB17
Genetic Testing Registry MAGEB17
NextProtA8MXT2 [Medical]
TSGene645864
GENETestsMAGEB17
Target ValidationMAGEB17
Huge Navigator MAGEB17 [HugePedia]
snp3D : Map Gene to Disease645864
BioCentury BCIQMAGEB17
ClinGenMAGEB17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645864
Chemical/Pharm GKB GenePA134872991
Clinical trialMAGEB17
Miscellaneous
canSAR (ICR)MAGEB17 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEB17
EVEXMAGEB17
GoPubMedMAGEB17
iHOPMAGEB17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:06:08 CEST 2017

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