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MAGEB18 (MAGE family member B18)

Identity

Alias_namesmelanoma antigen family B18
Alias_symbol (synonym)MGC33889
Other alias-
HGNC (Hugo) MAGEB18
LocusID (NCBI) 286514
Atlas_Id 43033
Location Xp21.3  [Link to chromosome band Xp21]
Location_base_pair Starts at 26138343 and ends at 26140736 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
USP9X (Xp11.4) / MAGEB18 (Xp21.3)USP9X Xp11.4 / MAGEB18 Xp21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(X;X)(p11;p21) USP9X/MAGEB18


External links

Nomenclature
HGNC (Hugo)MAGEB18   28515
Cards
Entrez_Gene (NCBI)MAGEB18  286514  MAGE family member B18
Aliases
GeneCards (Weizmann)MAGEB18
Ensembl hg19 (Hinxton)ENSG00000176774 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176774 [Gene_View]  ENSG00000176774 [Sequence]  chrX:26138343-26140736 [Contig_View]  MAGEB18 [Vega]
ICGC DataPortalENSG00000176774
TCGA cBioPortalMAGEB18
AceView (NCBI)MAGEB18
Genatlas (Paris)MAGEB18
WikiGenes286514
SOURCE (Princeton)MAGEB18
Genetics Home Reference (NIH)MAGEB18
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEB18  -     chrX:26138343-26140736 +  Xp21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEB18  -     Xp21.3   [Description]    (hg19-Feb_2009)
EnsemblMAGEB18 - Xp21.3 [CytoView hg19]  MAGEB18 - Xp21.3 [CytoView hg38]
Mapping of homologs : NCBIMAGEB18 [Mapview hg19]  MAGEB18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057361 BC029525
RefSeq transcript (Entrez)NM_173699
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEB18
Cluster EST : UnigeneHs.350683 [ NCBI ]
CGAP (NCI)Hs.350683
Alternative Splicing GalleryENSG00000176774
Gene ExpressionMAGEB18 [ NCBI-GEO ]   MAGEB18 [ EBI - ARRAY_EXPRESS ]   MAGEB18 [ SEEK ]   MAGEB18 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEB18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286514
GTEX Portal (Tissue expression)MAGEB18
Human Protein AtlasENSG00000176774-MAGEB18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M61
Splice isoforms : SwissVarQ96M61
PhosPhoSitePlusQ96M61
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE_N    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
Domain families : Smart (EMBL)MAGE (SM01373)  MAGE_N (SM01392)  
Conserved Domain (NCBI)MAGEB18
DMDM Disease mutations286514
Blocks (Seattle)MAGEB18
SuperfamilyQ96M61
Human Protein Atlas [tissue]ENSG00000176774-MAGEB18 [tissue]
Peptide AtlasQ96M61
HPRD06647
IPIIPI00065350   
Protein Interaction databases
DIP (DOE-UCLA)Q96M61
IntAct (EBI)Q96M61
FunCoupENSG00000176774
BioGRIDMAGEB18
STRING (EMBL)MAGEB18
ZODIACMAGEB18
Ontologies - Pathways
QuickGOQ96M61
Ontology : AmiGOprotein binding  cytoplasm  
Ontology : EGO-EBIprotein binding  cytoplasm  
NDEx NetworkMAGEB18
Atlas of Cancer Signalling NetworkMAGEB18
Wikipedia pathwaysMAGEB18
Orthology - Evolution
OrthoDB286514
GeneTree (enSembl)ENSG00000176774
Phylogenetic Trees/Animal Genes : TreeFamMAGEB18
HOVERGENQ96M61
HOGENOMQ96M61
Homologs : HomoloGeneMAGEB18
Homology/Alignments : Family Browser (UCSC)MAGEB18
Gene fusions - Rearrangements
Fusion : MitelmanUSP9X/MAGEB18 [Xp11.4/Xp21.3]  [t(X;X)(p11;p21)]  
Fusion PortalUSP9X Xp11.4 MAGEB18 Xp21.3 KIRC
Fusion : QuiverMAGEB18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEB18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEB18
dbVarMAGEB18
ClinVarMAGEB18
1000_GenomesMAGEB18 
Exome Variant ServerMAGEB18
ExAC (Exome Aggregation Consortium)ENSG00000176774
GNOMAD BrowserENSG00000176774
Genetic variants : HAPMAP286514
Genomic Variants (DGV)MAGEB18 [DGVbeta]
DECIPHERMAGEB18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEB18 
Mutations
ICGC Data PortalMAGEB18 
TCGA Data PortalMAGEB18 
Broad Tumor PortalMAGEB18
OASIS PortalMAGEB18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEB18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEB18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEB18
DgiDB (Drug Gene Interaction Database)MAGEB18
DoCM (Curated mutations)MAGEB18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEB18 (select a term)
intoGenMAGEB18
Cancer3DMAGEB18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMAGEB18
MedgenMAGEB18
Genetic Testing Registry MAGEB18
NextProtQ96M61 [Medical]
TSGene286514
GENETestsMAGEB18
Target ValidationMAGEB18
Huge Navigator MAGEB18 [HugePedia]
snp3D : Map Gene to Disease286514
BioCentury BCIQMAGEB18
ClinGenMAGEB18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286514
Chemical/Pharm GKB GenePA142671483
Clinical trialMAGEB18
Miscellaneous
canSAR (ICR)MAGEB18 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEB18
EVEXMAGEB18
GoPubMedMAGEB18
iHOPMAGEB18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:34:40 CEST 2018

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