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MAGEB3 (MAGE family member B3)

Identity

Alias_namesmember 5
Alias_symbol (synonym)CT3.5
Other alias
HGNC (Hugo) MAGEB3
LocusID (NCBI) 4114
Atlas_Id 41255
Location Xp21.2  [Link to chromosome band Xp21]
Location_base_pair Starts at 30248553 and ends at 30255610 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEB3   6810
Cards
Entrez_Gene (NCBI)MAGEB3  4114  MAGE family member B3
AliasesCT3.5
GeneCards (Weizmann)MAGEB3
Ensembl hg19 (Hinxton)ENSG00000198798 [Gene_View]  chrX:30248553-30255610 [Contig_View]  MAGEB3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198798 [Gene_View]  chrX:30248553-30255610 [Contig_View]  MAGEB3 [Vega]
ICGC DataPortalENSG00000198798
TCGA cBioPortalMAGEB3
AceView (NCBI)MAGEB3
Genatlas (Paris)MAGEB3
WikiGenes4114
SOURCE (Princeton)MAGEB3
Genetics Home Reference (NIH)MAGEB3
Genomic and cartography
GoldenPath hg19 (UCSC)MAGEB3  -     chrX:30248553-30255610 +  Xp21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAGEB3  -     Xp21.2   [Description]    (hg38-Dec_2013)
EnsemblMAGEB3 - Xp21.2 [CytoView hg19]  MAGEB3 - Xp21.2 [CytoView hg38]
Mapping of homologs : NCBIMAGEB3 [Mapview hg19]  MAGEB3 [Mapview hg38]
OMIM300152   
Gene and transcription
Genbank (Entrez)AA934059 AK057441 BC069784 BC074756 BC126320
RefSeq transcript (Entrez)NM_002365
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_015869 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)MAGEB3
Cluster EST : UnigeneHs.113290 [ NCBI ]
CGAP (NCI)Hs.113290
Alternative Splicing GalleryENSG00000198798
Gene ExpressionMAGEB3 [ NCBI-GEO ]   MAGEB3 [ EBI - ARRAY_EXPRESS ]   MAGEB3 [ SEEK ]   MAGEB3 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4114
GTEX Portal (Tissue expression)MAGEB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15480   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15480  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15480
Splice isoforms : SwissVarO15480
PhosPhoSitePlusO15480
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE_N    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
Conserved Domain (NCBI)MAGEB3
DMDM Disease mutations4114
Blocks (Seattle)MAGEB3
SuperfamilyO15480
Human Protein AtlasENSG00000198798
Peptide AtlasO15480
HPRD02149
IPIIPI00289940   
Protein Interaction databases
DIP (DOE-UCLA)O15480
IntAct (EBI)O15480
FunCoupENSG00000198798
BioGRIDMAGEB3
STRING (EMBL)MAGEB3
ZODIACMAGEB3
Ontologies - Pathways
QuickGOO15480
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMAGEB3
Atlas of Cancer Signalling NetworkMAGEB3
Wikipedia pathwaysMAGEB3
Orthology - Evolution
OrthoDB4114
GeneTree (enSembl)ENSG00000198798
Phylogenetic Trees/Animal Genes : TreeFamMAGEB3
HOVERGENO15480
HOGENOMO15480
Homologs : HomoloGeneMAGEB3
Homology/Alignments : Family Browser (UCSC)MAGEB3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEB3
dbVarMAGEB3
ClinVarMAGEB3
1000_GenomesMAGEB3 
Exome Variant ServerMAGEB3
ExAC (Exome Aggregation Consortium)MAGEB3 (select the gene name)
Genetic variants : HAPMAP4114
Genomic Variants (DGV)MAGEB3 [DGVbeta]
DECIPHER (Syndromes)X:30248553-30255610  ENSG00000198798
CONAN: Copy Number AnalysisMAGEB3 
Mutations
ICGC Data PortalMAGEB3 
TCGA Data PortalMAGEB3 
Broad Tumor PortalMAGEB3
OASIS PortalMAGEB3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEB3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEB3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEB3
DgiDB (Drug Gene Interaction Database)MAGEB3
DoCM (Curated mutations)MAGEB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEB3 (select a term)
intoGenMAGEB3
Cancer3DMAGEB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300152   
Orphanet
MedgenMAGEB3
Genetic Testing Registry MAGEB3
NextProtO15480 [Medical]
TSGene4114
GENETestsMAGEB3
Huge Navigator MAGEB3 [HugePedia]
snp3D : Map Gene to Disease4114
BioCentury BCIQMAGEB3
ClinGenMAGEB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4114
Chemical/Pharm GKB GenePA30556
Clinical trialMAGEB3
Miscellaneous
canSAR (ICR)MAGEB3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEB3
EVEXMAGEB3
GoPubMedMAGEB3
iHOPMAGEB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:14:12 CET 2017

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