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MAGEB4 (MAGE family member B4)

Identity

Alias_namesmelanoma antigen family B4
Alias_symbol (synonym)MGC33144
CT3.6
Other alias
HGNC (Hugo) MAGEB4
LocusID (NCBI) 4115
Atlas_Id 41256
Location Xp21.2  [Link to chromosome band Xp21]
Location_base_pair Starts at 30241940 and ends at 30244191 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEB4   6811
Cards
Entrez_Gene (NCBI)MAGEB4  4115  MAGE family member B4
AliasesCT3.6
GeneCards (Weizmann)MAGEB4
Ensembl hg19 (Hinxton)ENSG00000120289 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120289 [Gene_View]  chrX:30241940-30244191 [Contig_View]  MAGEB4 [Vega]
ICGC DataPortalENSG00000120289
TCGA cBioPortalMAGEB4
AceView (NCBI)MAGEB4
Genatlas (Paris)MAGEB4
WikiGenes4115
SOURCE (Princeton)MAGEB4
Genetics Home Reference (NIH)MAGEB4
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEB4  -     chrX:30241940-30244191 +  Xp21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEB4  -     Xp21.2   [Description]    (hg19-Feb_2009)
EnsemblMAGEB4 - Xp21.2 [CytoView hg19]  MAGEB4 - Xp21.2 [CytoView hg38]
Mapping of homologs : NCBIMAGEB4 [Mapview hg19]  MAGEB4 [Mapview hg38]
OMIM300153   
Gene and transcription
Genbank (Entrez)AK313769 BC032852 CR541779 DB056993 DQ891236
RefSeq transcript (Entrez)NM_002367
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEB4
Cluster EST : UnigeneHs.113291 [ NCBI ]
CGAP (NCI)Hs.113291
Alternative Splicing GalleryENSG00000120289
Gene ExpressionMAGEB4 [ NCBI-GEO ]   MAGEB4 [ EBI - ARRAY_EXPRESS ]   MAGEB4 [ SEEK ]   MAGEB4 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEB4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4115
GTEX Portal (Tissue expression)MAGEB4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15481   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15481  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15481
Splice isoforms : SwissVarO15481
PhosPhoSitePlusO15481
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE_N    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
Domain families : Smart (EMBL)MAGE (SM01373)  MAGE_N (SM01392)  
Conserved Domain (NCBI)MAGEB4
DMDM Disease mutations4115
Blocks (Seattle)MAGEB4
SuperfamilyO15481
Human Protein AtlasENSG00000120289
Peptide AtlasO15481
HPRD02150
IPIIPI00006737   
Protein Interaction databases
DIP (DOE-UCLA)O15481
IntAct (EBI)O15481
FunCoupENSG00000120289
BioGRIDMAGEB4
STRING (EMBL)MAGEB4
ZODIACMAGEB4
Ontologies - Pathways
QuickGOO15481
Ontology : AmiGOprotein binding  cytoplasm  
Ontology : EGO-EBIprotein binding  cytoplasm  
NDEx NetworkMAGEB4
Atlas of Cancer Signalling NetworkMAGEB4
Wikipedia pathwaysMAGEB4
Orthology - Evolution
OrthoDB4115
GeneTree (enSembl)ENSG00000120289
Phylogenetic Trees/Animal Genes : TreeFamMAGEB4
HOVERGENO15481
HOGENOMO15481
Homologs : HomoloGeneMAGEB4
Homology/Alignments : Family Browser (UCSC)MAGEB4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEB4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEB4
dbVarMAGEB4
ClinVarMAGEB4
1000_GenomesMAGEB4 
Exome Variant ServerMAGEB4
ExAC (Exome Aggregation Consortium)MAGEB4 (select the gene name)
Genetic variants : HAPMAP4115
Genomic Variants (DGV)MAGEB4 [DGVbeta]
DECIPHERMAGEB4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEB4 
Mutations
ICGC Data PortalMAGEB4 
TCGA Data PortalMAGEB4 
Broad Tumor PortalMAGEB4
OASIS PortalMAGEB4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEB4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEB4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEB4
DgiDB (Drug Gene Interaction Database)MAGEB4
DoCM (Curated mutations)MAGEB4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEB4 (select a term)
intoGenMAGEB4
Cancer3DMAGEB4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300153   
Orphanet
MedgenMAGEB4
Genetic Testing Registry MAGEB4
NextProtO15481 [Medical]
TSGene4115
GENETestsMAGEB4
Target ValidationMAGEB4
Huge Navigator MAGEB4 [HugePedia]
snp3D : Map Gene to Disease4115
BioCentury BCIQMAGEB4
ClinGenMAGEB4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4115
Chemical/Pharm GKB GenePA30557
Clinical trialMAGEB4
Miscellaneous
canSAR (ICR)MAGEB4 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEB4
EVEXMAGEB4
GoPubMedMAGEB4
iHOPMAGEB4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:06:09 CEST 2017

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