Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MAGEB5 (MAGE family member B5)

Identity

Alias_namesmember 3
Alias_symbol (synonym)MAGE-B5
CT3.3
Other alias
HGNC (Hugo) MAGEB5
LocusID (NCBI) 347541
Atlas_Id 41257
Location Xp21.3  [Link to chromosome band Xp21]
Location_base_pair Starts at 26234286 and ends at 26236387 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEB5   23795
Cards
Entrez_Gene (NCBI)MAGEB5  347541  MAGE family member B5
AliasesCT3.3; MAGE-B5
GeneCards (Weizmann)MAGEB5
Ensembl hg19 (Hinxton)ENSG00000188408 [Gene_View]  chrX:26234286-26236387 [Contig_View]  MAGEB5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188408 [Gene_View]  chrX:26234286-26236387 [Contig_View]  MAGEB5 [Vega]
ICGC DataPortalENSG00000188408
TCGA cBioPortalMAGEB5
AceView (NCBI)MAGEB5
Genatlas (Paris)MAGEB5
WikiGenes347541
SOURCE (Princeton)MAGEB5
Genetics Home Reference (NIH)MAGEB5
Genomic and cartography
GoldenPath hg19 (UCSC)MAGEB5  -     chrX:26234286-26236387 +  Xp21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAGEB5  -     Xp21.3   [Description]    (hg38-Dec_2013)
EnsemblMAGEB5 - Xp21.3 [CytoView hg19]  MAGEB5 - Xp21.3 [CytoView hg38]
Mapping of homologs : NCBIMAGEB5 [Mapview hg19]  MAGEB5 [Mapview hg38]
OMIM300466   
Gene and transcription
Genbank (Entrez)CR747535
RefSeq transcript (Entrez)NM_001271752
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)MAGEB5
Cluster EST : UnigeneHs.224079 [ NCBI ]
CGAP (NCI)Hs.224079
Alternative Splicing GalleryENSG00000188408
Gene ExpressionMAGEB5 [ NCBI-GEO ]   MAGEB5 [ EBI - ARRAY_EXPRESS ]   MAGEB5 [ SEEK ]   MAGEB5 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEB5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347541
GTEX Portal (Tissue expression)MAGEB5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZ81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZ81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZ81
Splice isoforms : SwissVarQ9BZ81
PhosPhoSitePlusQ9BZ81
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGEB5    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)   
Domain families : Pfam (NCBI)pfam01454   
Conserved Domain (NCBI)MAGEB5
DMDM Disease mutations347541
Blocks (Seattle)MAGEB5
SuperfamilyQ9BZ81
Human Protein AtlasENSG00000188408
Peptide AtlasQ9BZ81
IPIIPI00887293   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZ81
IntAct (EBI)Q9BZ81
FunCoupENSG00000188408
BioGRIDMAGEB5
STRING (EMBL)MAGEB5
ZODIACMAGEB5
Ontologies - Pathways
QuickGOQ9BZ81
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkMAGEB5
Atlas of Cancer Signalling NetworkMAGEB5
Wikipedia pathwaysMAGEB5
Orthology - Evolution
OrthoDB347541
GeneTree (enSembl)ENSG00000188408
Phylogenetic Trees/Animal Genes : TreeFamMAGEB5
HOVERGENQ9BZ81
HOGENOMQ9BZ81
Homologs : HomoloGeneMAGEB5
Homology/Alignments : Family Browser (UCSC)MAGEB5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEB5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEB5
dbVarMAGEB5
ClinVarMAGEB5
1000_GenomesMAGEB5 
Exome Variant ServerMAGEB5
ExAC (Exome Aggregation Consortium)MAGEB5 (select the gene name)
Genetic variants : HAPMAP347541
Genomic Variants (DGV)MAGEB5 [DGVbeta]
DECIPHER (Syndromes)X:26234286-26236387  ENSG00000188408
CONAN: Copy Number AnalysisMAGEB5 
Mutations
ICGC Data PortalMAGEB5 
TCGA Data PortalMAGEB5 
Broad Tumor PortalMAGEB5
OASIS PortalMAGEB5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEB5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEB5
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEB5
DgiDB (Drug Gene Interaction Database)MAGEB5
DoCM (Curated mutations)MAGEB5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEB5 (select a term)
intoGenMAGEB5
Cancer3DMAGEB5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300466   
Orphanet
MedgenMAGEB5
Genetic Testing Registry MAGEB5
NextProtQ9BZ81 [Medical]
TSGene347541
GENETestsMAGEB5
Huge Navigator MAGEB5 [HugePedia]
snp3D : Map Gene to Disease347541
BioCentury BCIQMAGEB5
ClinGenMAGEB5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347541
Chemical/Pharm GKB GenePA134913823
Clinical trialMAGEB5
Miscellaneous
canSAR (ICR)MAGEB5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEB5
EVEXMAGEB5
GoPubMedMAGEB5
iHOPMAGEB5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:08:18 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.