Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MAGEC1 (MAGE family member C1)

Identity

Alias_namesmember 1
Alias_symbol (synonym)MAGE-C1
CT7
MGC39366
CT7.1
Other alias
HGNC (Hugo) MAGEC1
LocusID (NCBI) 9947
Atlas_Id 41259
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 141903856 and ends at 141909401 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEC1   6812
Cards
Entrez_Gene (NCBI)MAGEC1  9947  MAGE family member C1
AliasesCT7; CT7.1
GeneCards (Weizmann)MAGEC1
Ensembl hg19 (Hinxton)ENSG00000155495 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155495 [Gene_View]  chrX:141903856-141909401 [Contig_View]  MAGEC1 [Vega]
ICGC DataPortalENSG00000155495
TCGA cBioPortalMAGEC1
AceView (NCBI)MAGEC1
Genatlas (Paris)MAGEC1
WikiGenes9947
SOURCE (Princeton)MAGEC1
Genetics Home Reference (NIH)MAGEC1
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEC1  -     chrX:141903856-141909401 +  Xq27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEC1  -     Xq27.2   [Description]    (hg19-Feb_2009)
EnsemblMAGEC1 - Xq27.2 [CytoView hg19]  MAGEC1 - Xq27.2 [CytoView hg38]
Mapping of homologs : NCBIMAGEC1 [Mapview hg19]  MAGEC1 [Mapview hg38]
OMIM300223   
Gene and transcription
Genbank (Entrez)AF056334 BC025969 BC127771 BC153867 BQ772869
RefSeq transcript (Entrez)NM_005462
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEC1
Cluster EST : UnigeneHs.132194 [ NCBI ]
CGAP (NCI)Hs.132194
Alternative Splicing GalleryENSG00000155495
Gene ExpressionMAGEC1 [ NCBI-GEO ]   MAGEC1 [ EBI - ARRAY_EXPRESS ]   MAGEC1 [ SEEK ]   MAGEC1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9947
GTEX Portal (Tissue expression)MAGEC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60732   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60732  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60732
Splice isoforms : SwissVarO60732
PhosPhoSitePlusO60732
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)   
Domain families : Pfam (NCBI)pfam01454   
Domain families : Smart (EMBL)MAGE (SM01373)  
Conserved Domain (NCBI)MAGEC1
DMDM Disease mutations9947
Blocks (Seattle)MAGEC1
SuperfamilyO60732
Human Protein AtlasENSG00000155495
Peptide AtlasO60732
HPRD02201
IPIIPI00299085   IPI00903254   IPI00871873   
Protein Interaction databases
DIP (DOE-UCLA)O60732
IntAct (EBI)O60732
FunCoupENSG00000155495
BioGRIDMAGEC1
STRING (EMBL)MAGEC1
ZODIACMAGEC1
Ontologies - Pathways
QuickGOO60732
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkMAGEC1
Atlas of Cancer Signalling NetworkMAGEC1
Wikipedia pathwaysMAGEC1
Orthology - Evolution
OrthoDB9947
GeneTree (enSembl)ENSG00000155495
Phylogenetic Trees/Animal Genes : TreeFamMAGEC1
HOVERGENO60732
HOGENOMO60732
Homologs : HomoloGeneMAGEC1
Homology/Alignments : Family Browser (UCSC)MAGEC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEC1
dbVarMAGEC1
ClinVarMAGEC1
1000_GenomesMAGEC1 
Exome Variant ServerMAGEC1
ExAC (Exome Aggregation Consortium)MAGEC1 (select the gene name)
Genetic variants : HAPMAP9947
Genomic Variants (DGV)MAGEC1 [DGVbeta]
DECIPHERMAGEC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEC1 
Mutations
ICGC Data PortalMAGEC1 
TCGA Data PortalMAGEC1 
Broad Tumor PortalMAGEC1
OASIS PortalMAGEC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEC1
DgiDB (Drug Gene Interaction Database)MAGEC1
DoCM (Curated mutations)MAGEC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEC1 (select a term)
intoGenMAGEC1
Cancer3DMAGEC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300223   
Orphanet
MedgenMAGEC1
Genetic Testing Registry MAGEC1
NextProtO60732 [Medical]
TSGene9947
GENETestsMAGEC1
Target ValidationMAGEC1
Huge Navigator MAGEC1 [HugePedia]
snp3D : Map Gene to Disease9947
BioCentury BCIQMAGEC1
ClinGenMAGEC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9947
Chemical/Pharm GKB GenePA30558
Clinical trialMAGEC1
Miscellaneous
canSAR (ICR)MAGEC1 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEC1
EVEXMAGEC1
GoPubMedMAGEC1
iHOPMAGEC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:42:00 CEST 2017

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