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MAGEC1 (MAGE family member C1)

Identity

Alias (NCBI)CT7
CT7.1
HGNC (Hugo) MAGEC1
HGNC Alias symbMAGE-C1
CT7
MGC39366
CT7.1
HGNC Alias namecancer/testis antigen family 7, member 1
HGNC Previous namemelanoma antigen family C1
LocusID (NCBI) 9947
Atlas_Id 41259
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 141903894 and ends at 141909372 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MAGEC1   6812
Cards
Entrez_Gene (NCBI)MAGEC1    MAGE family member C1
AliasesCT7; CT7.1
GeneCards (Weizmann)MAGEC1
Ensembl hg19 (Hinxton)ENSG00000155495 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155495 [Gene_View]  ENSG00000155495 [Sequence]  chrX:141903894-141909372 [Contig_View]  MAGEC1 [Vega]
ICGC DataPortalENSG00000155495
TCGA cBioPortalMAGEC1
AceView (NCBI)MAGEC1
Genatlas (Paris)MAGEC1
SOURCE (Princeton)MAGEC1
Genetics Home Reference (NIH)MAGEC1
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEC1  -     chrX:141903894-141909372 +  Xq27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEC1  -     Xq27.2   [Description]    (hg19-Feb_2009)
GoldenPathMAGEC1 - Xq27.2 [CytoView hg19]  MAGEC1 - Xq27.2 [CytoView hg38]
ImmunoBaseENSG00000155495
Genome Data Viewer NCBIMAGEC1 [Mapview hg19]  
OMIM300223   
Gene and transcription
Genbank (Entrez)AF056334 BC025969 BC127771 BC153867 BQ772869
RefSeq transcript (Entrez)NM_005462
Consensus coding sequences : CCDS (NCBI)MAGEC1
Gene ExpressionMAGEC1 [ NCBI-GEO ]   MAGEC1 [ EBI - ARRAY_EXPRESS ]   MAGEC1 [ SEEK ]   MAGEC1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEC1 [ Firebrowse - Broad ]
GenevisibleExpression of MAGEC1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9947
GTEX Portal (Tissue expression)MAGEC1
Human Protein AtlasENSG00000155495-MAGEC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60732   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60732  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60732
PhosPhoSitePlusO60732
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE    MAGE_WH1    MAGE_WH2    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)   
Domain families : Pfam (NCBI)pfam01454   
Domain families : Smart (EMBL)MAGE (SM01373)  
Conserved Domain (NCBI)MAGEC1
SuperfamilyO60732
AlphaFold pdb e-kbO60732   
Human Protein Atlas [tissue]ENSG00000155495-MAGEC1 [tissue]
HPRD02201
Protein Interaction databases
DIP (DOE-UCLA)O60732
IntAct (EBI)O60732
BioGRIDMAGEC1
STRING (EMBL)MAGEC1
ZODIACMAGEC1
Ontologies - Pathways
QuickGOO60732
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  protein binding  nucleus  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  protein binding  nucleus  
NDEx NetworkMAGEC1
Atlas of Cancer Signalling NetworkMAGEC1
Wikipedia pathwaysMAGEC1
Orthology - Evolution
OrthoDB9947
GeneTree (enSembl)ENSG00000155495
Phylogenetic Trees/Animal Genes : TreeFamMAGEC1
Homologs : HomoloGeneMAGEC1
Homology/Alignments : Family Browser (UCSC)MAGEC1
Gene fusions - Rearrangements
Fusion : QuiverMAGEC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEC1
dbVarMAGEC1
ClinVarMAGEC1
MonarchMAGEC1
1000_GenomesMAGEC1 
Exome Variant ServerMAGEC1
GNOMAD BrowserENSG00000155495
Varsome BrowserMAGEC1
ACMGMAGEC1 variants
VarityO60732
Genomic Variants (DGV)MAGEC1 [DGVbeta]
DECIPHERMAGEC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEC1 
Mutations
ICGC Data PortalMAGEC1 
TCGA Data PortalMAGEC1 
Broad Tumor PortalMAGEC1
OASIS PortalMAGEC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEC1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMAGEC1
Mutations and Diseases : HGMDMAGEC1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMAGEC1
DgiDB (Drug Gene Interaction Database)MAGEC1
DoCM (Curated mutations)MAGEC1
CIViC (Clinical Interpretations of Variants in Cancer)MAGEC1
Cancer3DMAGEC1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300223   
Orphanet
DisGeNETMAGEC1
MedgenMAGEC1
Genetic Testing Registry MAGEC1
NextProtO60732 [Medical]
GENETestsMAGEC1
Target ValidationMAGEC1
Huge Navigator MAGEC1 [HugePedia]
ClinGenMAGEC1
Clinical trials, drugs, therapy
MyCancerGenomeMAGEC1
Protein Interactions : CTDMAGEC1
Pharm GKB GenePA30558
PharosO60732
Clinical trialMAGEC1
Miscellaneous
canSAR (ICR)MAGEC1
HarmonizomeMAGEC1
ARCHS4MAGEC1
DataMed IndexMAGEC1
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMAGEC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:42:58 CET 2022

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