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MAGEC2 (MAGE family member C2)

Identity

Alias_namesMAGEE1
melanoma antigen, family E, 1, cancer/testis specific
melanoma antigen family C2
Alias_symbol (synonym)CT10
MAGE-C2
Other aliasHCA587
HGNC (Hugo) MAGEC2
LocusID (NCBI) 51438
Atlas_Id 41264
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 142202342 and ends at 142205290 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEC2   13574
Cards
Entrez_Gene (NCBI)MAGEC2  51438  MAGE family member C2
AliasesCT10; HCA587; MAGEE1
GeneCards (Weizmann)MAGEC2
Ensembl hg19 (Hinxton)ENSG00000046774 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000046774 [Gene_View]  chrX:142202342-142205290 [Contig_View]  MAGEC2 [Vega]
ICGC DataPortalENSG00000046774
TCGA cBioPortalMAGEC2
AceView (NCBI)MAGEC2
Genatlas (Paris)MAGEC2
WikiGenes51438
SOURCE (Princeton)MAGEC2
Genetics Home Reference (NIH)MAGEC2
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEC2  -     chrX:142202342-142205290 -  Xq27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEC2  -     Xq27.2   [Description]    (hg19-Feb_2009)
EnsemblMAGEC2 - Xq27.2 [CytoView hg19]  MAGEC2 - Xq27.2 [CytoView hg38]
Mapping of homologs : NCBIMAGEC2 [Mapview hg19]  MAGEC2 [Mapview hg38]
OMIM300468   
Gene and transcription
Genbank (Entrez)AF116194 AF151378 AF196482 AK313591 BC005891
RefSeq transcript (Entrez)NM_016249
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEC2
Cluster EST : UnigeneHs.123536 [ NCBI ]
CGAP (NCI)Hs.123536
Alternative Splicing GalleryENSG00000046774
Gene ExpressionMAGEC2 [ NCBI-GEO ]   MAGEC2 [ EBI - ARRAY_EXPRESS ]   MAGEC2 [ SEEK ]   MAGEC2 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51438
GTEX Portal (Tissue expression)MAGEC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBF1
Splice isoforms : SwissVarQ9UBF1
PhosPhoSitePlusQ9UBF1
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MHD_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)MAGE (SM01373)  
Conserved Domain (NCBI)MAGEC2
DMDM Disease mutations51438
Blocks (Seattle)MAGEC2
SuperfamilyQ9UBF1
Human Protein AtlasENSG00000046774
Peptide AtlasQ9UBF1
HPRD06632
IPIIPI00008278   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBF1
IntAct (EBI)Q9UBF1
FunCoupENSG00000046774
BioGRIDMAGEC2
STRING (EMBL)MAGEC2
ZODIACMAGEC2
Ontologies - Pathways
QuickGOQ9UBF1
Ontology : AmiGOprotein binding  nucleus  nucleolus  cytoplasm  cytosol  ubiquitin protein ligase binding  cellular protein catabolic process  positive regulation of ubiquitin-protein transferase activity  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  cytoplasm  cytosol  ubiquitin protein ligase binding  cellular protein catabolic process  positive regulation of ubiquitin-protein transferase activity  
NDEx NetworkMAGEC2
Atlas of Cancer Signalling NetworkMAGEC2
Wikipedia pathwaysMAGEC2
Orthology - Evolution
OrthoDB51438
GeneTree (enSembl)ENSG00000046774
Phylogenetic Trees/Animal Genes : TreeFamMAGEC2
HOVERGENQ9UBF1
HOGENOMQ9UBF1
Homologs : HomoloGeneMAGEC2
Homology/Alignments : Family Browser (UCSC)MAGEC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEC2
dbVarMAGEC2
ClinVarMAGEC2
1000_GenomesMAGEC2 
Exome Variant ServerMAGEC2
ExAC (Exome Aggregation Consortium)MAGEC2 (select the gene name)
Genetic variants : HAPMAP51438
Genomic Variants (DGV)MAGEC2 [DGVbeta]
DECIPHERMAGEC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEC2 
Mutations
ICGC Data PortalMAGEC2 
TCGA Data PortalMAGEC2 
Broad Tumor PortalMAGEC2
OASIS PortalMAGEC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEC2
DgiDB (Drug Gene Interaction Database)MAGEC2
DoCM (Curated mutations)MAGEC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEC2 (select a term)
intoGenMAGEC2
Cancer3DMAGEC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300468   
Orphanet
MedgenMAGEC2
Genetic Testing Registry MAGEC2
NextProtQ9UBF1 [Medical]
TSGene51438
GENETestsMAGEC2
Target ValidationMAGEC2
Huge Navigator MAGEC2 [HugePedia]
snp3D : Map Gene to Disease51438
BioCentury BCIQMAGEC2
ClinGenMAGEC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51438
Chemical/Pharm GKB GenePA134954317
Clinical trialMAGEC2
Miscellaneous
canSAR (ICR)MAGEC2 (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEC2
EVEXMAGEC2
GoPubMedMAGEC2
iHOPMAGEC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:42:00 CEST 2017

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