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MAGEC2 (MAGE family member C2)

Identity

Alias (NCBI)CT10
HCA587
MAGEE1
HGNC (Hugo) MAGEC2
HGNC Alias symbCT10
MAGE-C2
HCA587
HGNC Alias namecancer/testis antigen 10
HGNC Previous nameMAGEE1
HGNC Previous namemelanoma antigen, family E, 1, cancer/testis specific
 melanoma antigen family C2
LocusID (NCBI) 51438
Atlas_Id 41264
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 142202342 and ends at 142205290 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MAGEC2   13574
Cards
Entrez_Gene (NCBI)MAGEC2    MAGE family member C2
AliasesCT10; HCA587; MAGEE1
GeneCards (Weizmann)MAGEC2
Ensembl hg19 (Hinxton)ENSG00000046774 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000046774 [Gene_View]  ENSG00000046774 [Sequence]  chrX:142202342-142205290 [Contig_View]  MAGEC2 [Vega]
ICGC DataPortalENSG00000046774
TCGA cBioPortalMAGEC2
AceView (NCBI)MAGEC2
Genatlas (Paris)MAGEC2
SOURCE (Princeton)MAGEC2
Genetics Home Reference (NIH)MAGEC2
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEC2  -     chrX:142202342-142205290 -  Xq27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEC2  -     Xq27.2   [Description]    (hg19-Feb_2009)
GoldenPathMAGEC2 - Xq27.2 [CytoView hg19]  MAGEC2 - Xq27.2 [CytoView hg38]
ImmunoBaseENSG00000046774
Genome Data Viewer NCBIMAGEC2 [Mapview hg19]  
OMIM300468   
Gene and transcription
Genbank (Entrez)AF116194 AF151378 AF196482 AK313591 BC005891
RefSeq transcript (Entrez)NM_016249
Consensus coding sequences : CCDS (NCBI)MAGEC2
Gene ExpressionMAGEC2 [ NCBI-GEO ]   MAGEC2 [ EBI - ARRAY_EXPRESS ]   MAGEC2 [ SEEK ]   MAGEC2 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEC2 [ Firebrowse - Broad ]
GenevisibleExpression of MAGEC2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51438
GTEX Portal (Tissue expression)MAGEC2
Human Protein AtlasENSG00000046774-MAGEC2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBF1
PhosPhoSitePlusQ9UBF1
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE    MAGE_WH1    MAGE_WH2    MHD_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)MAGE (SM01373)  
Conserved Domain (NCBI)MAGEC2
SuperfamilyQ9UBF1
AlphaFold pdb e-kbQ9UBF1   
Human Protein Atlas [tissue]ENSG00000046774-MAGEC2 [tissue]
HPRD06632
Protein Interaction databases
DIP (DOE-UCLA)Q9UBF1
IntAct (EBI)Q9UBF1
BioGRIDMAGEC2
STRING (EMBL)MAGEC2
ZODIACMAGEC2
Ontologies - Pathways
QuickGOQ9UBF1
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  ubiquitin protein ligase binding  cellular protein catabolic process  positive regulation of ubiquitin-protein transferase activity  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  ubiquitin protein ligase binding  cellular protein catabolic process  positive regulation of ubiquitin-protein transferase activity  
NDEx NetworkMAGEC2
Atlas of Cancer Signalling NetworkMAGEC2
Wikipedia pathwaysMAGEC2
Orthology - Evolution
OrthoDB51438
GeneTree (enSembl)ENSG00000046774
Phylogenetic Trees/Animal Genes : TreeFamMAGEC2
Homologs : HomoloGeneMAGEC2
Homology/Alignments : Family Browser (UCSC)MAGEC2
Gene fusions - Rearrangements
Fusion : QuiverMAGEC2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEC2
dbVarMAGEC2
ClinVarMAGEC2
MonarchMAGEC2
1000_GenomesMAGEC2 
Exome Variant ServerMAGEC2
GNOMAD BrowserENSG00000046774
Varsome BrowserMAGEC2
ACMGMAGEC2 variants
VarityQ9UBF1
Genomic Variants (DGV)MAGEC2 [DGVbeta]
DECIPHERMAGEC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEC2 
Mutations
ICGC Data PortalMAGEC2 
TCGA Data PortalMAGEC2 
Broad Tumor PortalMAGEC2
OASIS PortalMAGEC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEC2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMAGEC2
Mutations and Diseases : HGMDMAGEC2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMAGEC2
DgiDB (Drug Gene Interaction Database)MAGEC2
DoCM (Curated mutations)MAGEC2
CIViC (Clinical Interpretations of Variants in Cancer)MAGEC2
Cancer3DMAGEC2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300468   
Orphanet
DisGeNETMAGEC2
MedgenMAGEC2
Genetic Testing Registry MAGEC2
NextProtQ9UBF1 [Medical]
GENETestsMAGEC2
Target ValidationMAGEC2
Huge Navigator MAGEC2 [HugePedia]
ClinGenMAGEC2
Clinical trials, drugs, therapy
MyCancerGenomeMAGEC2
Protein Interactions : CTDMAGEC2
Pharm GKB GenePA134954317
PharosQ9UBF1
Clinical trialMAGEC2
Miscellaneous
canSAR (ICR)MAGEC2
HarmonizomeMAGEC2
ARCHS4MAGEC2
DataMed IndexMAGEC2
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMAGEC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sun Jan 16 18:19:22 CET 2022

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