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MAGEC3 (MAGE family member C3)

Identity

Alias (NCBI)CT7.2
HCA2
MAGE-C3
MAGEC4
HGNC (Hugo) MAGEC3
HGNC Alias symbHCA2
MAGE-C3
CT7.2
HGNC Alias namecancer/testis antigen family 7, member 2
HGNC Previous namemelanoma antigen family C3
LocusID (NCBI) 139081
Atlas_Id 41260
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 141894666 and ends at 141897832 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MAGEC3   23798
Cards
Entrez_Gene (NCBI)MAGEC3    MAGE family member C3
AliasesCT7.2; HCA2; MAGE-C3; MAGEC4
GeneCards (Weizmann)MAGEC3
Ensembl hg19 (Hinxton)ENSG00000165509 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165509 [Gene_View]  ENSG00000165509 [Sequence]  chrX:141894666-141897832 [Contig_View]  MAGEC3 [Vega]
ICGC DataPortalENSG00000165509
TCGA cBioPortalMAGEC3
AceView (NCBI)MAGEC3
Genatlas (Paris)MAGEC3
SOURCE (Princeton)MAGEC3
Genetics Home Reference (NIH)MAGEC3
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEC3  -     chrX:141894666-141897832 +  Xq27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEC3  -     Xq27.2   [Description]    (hg19-Feb_2009)
GoldenPathMAGEC3 - Xq27.2 [CytoView hg19]  MAGEC3 - Xq27.2 [CytoView hg38]
ImmunoBaseENSG00000165509
Genome Data Viewer NCBIMAGEC3 [Mapview hg19]  
OMIM300469   
Gene and transcription
Genbank (Entrez)AF490508 AK297650 BC103893 BC103894
RefSeq transcript (Entrez)NM_138702 NM_177456
Consensus coding sequences : CCDS (NCBI)MAGEC3
Gene ExpressionMAGEC3 [ NCBI-GEO ]   MAGEC3 [ EBI - ARRAY_EXPRESS ]   MAGEC3 [ SEEK ]   MAGEC3 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEC3 [ Firebrowse - Broad ]
GenevisibleExpression of MAGEC3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139081
GTEX Portal (Tissue expression)MAGEC3
Human Protein AtlasENSG00000165509-MAGEC3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TD91   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TD91  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TD91
PhosPhoSitePlusQ8TD91
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE    MAGE_WH1    MAGE_WH2    MHD_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)MAGE (SM01373)  
Conserved Domain (NCBI)MAGEC3
SuperfamilyQ8TD91
AlphaFold pdb e-kbQ8TD91   
Human Protein Atlas [tissue]ENSG00000165509-MAGEC3 [tissue]
HPRD06629
Protein Interaction databases
DIP (DOE-UCLA)Q8TD91
IntAct (EBI)Q8TD91
BioGRIDMAGEC3
STRING (EMBL)MAGEC3
ZODIACMAGEC3
Ontologies - Pathways
QuickGOQ8TD91
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMAGEC3
Atlas of Cancer Signalling NetworkMAGEC3
Wikipedia pathwaysMAGEC3
Orthology - Evolution
OrthoDB139081
GeneTree (enSembl)ENSG00000165509
Phylogenetic Trees/Animal Genes : TreeFamMAGEC3
Homologs : HomoloGeneMAGEC3
Homology/Alignments : Family Browser (UCSC)MAGEC3
Gene fusions - Rearrangements
Fusion : QuiverMAGEC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEC3
dbVarMAGEC3
ClinVarMAGEC3
MonarchMAGEC3
1000_GenomesMAGEC3 
Exome Variant ServerMAGEC3
GNOMAD BrowserENSG00000165509
Varsome BrowserMAGEC3
ACMGMAGEC3 variants
VarityQ8TD91
Genomic Variants (DGV)MAGEC3 [DGVbeta]
DECIPHERMAGEC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEC3 
Mutations
ICGC Data PortalMAGEC3 
TCGA Data PortalMAGEC3 
Broad Tumor PortalMAGEC3
OASIS PortalMAGEC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEC3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMAGEC3
Mutations and Diseases : HGMDMAGEC3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMAGEC3
DgiDB (Drug Gene Interaction Database)MAGEC3
DoCM (Curated mutations)MAGEC3
CIViC (Clinical Interpretations of Variants in Cancer)MAGEC3
Cancer3DMAGEC3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300469   
Orphanet
DisGeNETMAGEC3
MedgenMAGEC3
Genetic Testing Registry MAGEC3
NextProtQ8TD91 [Medical]
GENETestsMAGEC3
Target ValidationMAGEC3
Huge Navigator MAGEC3 [HugePedia]
ClinGenMAGEC3
Clinical trials, drugs, therapy
MyCancerGenomeMAGEC3
Protein Interactions : CTDMAGEC3
Pharm GKB GenePA134916199
PharosQ8TD91
Clinical trialMAGEC3
Miscellaneous
canSAR (ICR)MAGEC3
HarmonizomeMAGEC3
ARCHS4MAGEC3
DataMed IndexMAGEC3
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMAGEC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:19:22 CET 2022

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