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MAGEC3 (MAGE family member C3)

Identity

Alias_namesmember 2
Alias_symbol (synonym)HCA2
MAGE-C3
CT7.2
Other aliasMAGEC4
HGNC (Hugo) MAGEC3
LocusID (NCBI) 139081
Atlas_Id 41260
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 141838316 and ends at 141897832 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEC3   23798
Cards
Entrez_Gene (NCBI)MAGEC3  139081  MAGE family member C3
AliasesCT7.2; HCA2; MAGE-C3; MAGEC4
GeneCards (Weizmann)MAGEC3
Ensembl hg19 (Hinxton)ENSG00000165509 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165509 [Gene_View]  chrX:141838316-141897832 [Contig_View]  MAGEC3 [Vega]
ICGC DataPortalENSG00000165509
TCGA cBioPortalMAGEC3
AceView (NCBI)MAGEC3
Genatlas (Paris)MAGEC3
WikiGenes139081
SOURCE (Princeton)MAGEC3
Genetics Home Reference (NIH)MAGEC3
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEC3  -     chrX:141838316-141897832 +  Xq27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEC3  -     Xq27.2   [Description]    (hg19-Feb_2009)
EnsemblMAGEC3 - Xq27.2 [CytoView hg19]  MAGEC3 - Xq27.2 [CytoView hg38]
Mapping of homologs : NCBIMAGEC3 [Mapview hg19]  MAGEC3 [Mapview hg38]
OMIM300469   
Gene and transcription
Genbank (Entrez)AF490508 AK297650 BC103893 BC103894
RefSeq transcript (Entrez)NM_138702 NM_177456
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEC3
Cluster EST : UnigeneHs.356870 [ NCBI ]
CGAP (NCI)Hs.356870
Alternative Splicing GalleryENSG00000165509
Gene ExpressionMAGEC3 [ NCBI-GEO ]   MAGEC3 [ EBI - ARRAY_EXPRESS ]   MAGEC3 [ SEEK ]   MAGEC3 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139081
GTEX Portal (Tissue expression)MAGEC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TD91   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TD91  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TD91
Splice isoforms : SwissVarQ8TD91
PhosPhoSitePlusQ8TD91
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MHD_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)MAGE (SM01373)  
Conserved Domain (NCBI)MAGEC3
DMDM Disease mutations139081
Blocks (Seattle)MAGEC3
SuperfamilyQ8TD91
Human Protein AtlasENSG00000165509
Peptide AtlasQ8TD91
HPRD06629
IPIIPI00152490   IPI00909443   IPI01014421   IPI00334726   
Protein Interaction databases
DIP (DOE-UCLA)Q8TD91
IntAct (EBI)Q8TD91
FunCoupENSG00000165509
BioGRIDMAGEC3
STRING (EMBL)MAGEC3
ZODIACMAGEC3
Ontologies - Pathways
QuickGOQ8TD91
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMAGEC3
Atlas of Cancer Signalling NetworkMAGEC3
Wikipedia pathwaysMAGEC3
Orthology - Evolution
OrthoDB139081
GeneTree (enSembl)ENSG00000165509
Phylogenetic Trees/Animal Genes : TreeFamMAGEC3
HOVERGENQ8TD91
HOGENOMQ8TD91
Homologs : HomoloGeneMAGEC3
Homology/Alignments : Family Browser (UCSC)MAGEC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEC3
dbVarMAGEC3
ClinVarMAGEC3
1000_GenomesMAGEC3 
Exome Variant ServerMAGEC3
ExAC (Exome Aggregation Consortium)MAGEC3 (select the gene name)
Genetic variants : HAPMAP139081
Genomic Variants (DGV)MAGEC3 [DGVbeta]
DECIPHERMAGEC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEC3 
Mutations
ICGC Data PortalMAGEC3 
TCGA Data PortalMAGEC3 
Broad Tumor PortalMAGEC3
OASIS PortalMAGEC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEC3
DgiDB (Drug Gene Interaction Database)MAGEC3
DoCM (Curated mutations)MAGEC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEC3 (select a term)
intoGenMAGEC3
Cancer3DMAGEC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300469   
Orphanet
MedgenMAGEC3
Genetic Testing Registry MAGEC3
NextProtQ8TD91 [Medical]
TSGene139081
GENETestsMAGEC3
Target ValidationMAGEC3
Huge Navigator MAGEC3 [HugePedia]
snp3D : Map Gene to Disease139081
BioCentury BCIQMAGEC3
ClinGenMAGEC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139081
Chemical/Pharm GKB GenePA134916199
Clinical trialMAGEC3
Miscellaneous
canSAR (ICR)MAGEC3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEC3
EVEXMAGEC3
GoPubMedMAGEC3
iHOPMAGEC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:06:10 CEST 2017

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