Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MAGED1 (MAGE family member D1)

Identity

Alias_namesmelanoma antigen family D1
Alias_symbol (synonym)NRAGE
DLXIN-1
Other alias
HGNC (Hugo) MAGED1
LocusID (NCBI) 9500
Atlas_Id 41261
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 51893602 and ends at 51902356 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LGALS1 (22q13.1) / MAGED1 (Xp11.22)MAGED1 (Xp11.22) / LUC7L (16p13.3)MAGED1 (Xp11.22) / MAGED1 (Xp11.22)
MAGED1 (Xp11.22) / RAB18 (10p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MAGED1   6813
Cards
Entrez_Gene (NCBI)MAGED1  9500  MAGE family member D1
AliasesDLXIN-1; NRAGE
GeneCards (Weizmann)MAGED1
Ensembl hg19 (Hinxton)ENSG00000179222 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179222 [Gene_View]  ENSG00000179222 [Sequence]  chrX:51893602-51902356 [Contig_View]  MAGED1 [Vega]
ICGC DataPortalENSG00000179222
TCGA cBioPortalMAGED1
AceView (NCBI)MAGED1
Genatlas (Paris)MAGED1
WikiGenes9500
SOURCE (Princeton)MAGED1
Genetics Home Reference (NIH)MAGED1
Genomic and cartography
GoldenPath hg38 (UCSC)MAGED1  -     chrX:51893602-51902356 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGED1  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblMAGED1 - Xp11.22 [CytoView hg19]  MAGED1 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBIMAGED1 [Mapview hg19]  MAGED1 [Mapview hg38]
OMIM300224   
Gene and transcription
Genbank (Entrez)AF124440 AF132205 AF217963 AF258554 AF300328
RefSeq transcript (Entrez)NM_001005332 NM_001005333 NM_006986
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGED1
Cluster EST : UnigeneHs.5258 [ NCBI ]
CGAP (NCI)Hs.5258
Alternative Splicing GalleryENSG00000179222
Gene ExpressionMAGED1 [ NCBI-GEO ]   MAGED1 [ EBI - ARRAY_EXPRESS ]   MAGED1 [ SEEK ]   MAGED1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGED1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9500
GTEX Portal (Tissue expression)MAGED1
Human Protein AtlasENSG00000179222-MAGED1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5V3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5V3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5V3
Splice isoforms : SwissVarQ9Y5V3
PhosPhoSitePlusQ9Y5V3
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGED1    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)   
Domain families : Pfam (NCBI)pfam01454   
Domain families : Smart (EMBL)MAGE (SM01373)  
Conserved Domain (NCBI)MAGED1
DMDM Disease mutations9500
Blocks (Seattle)MAGED1
SuperfamilyQ9Y5V3
Human Protein Atlas [tissue]ENSG00000179222-MAGED1 [tissue]
Peptide AtlasQ9Y5V3
HPRD02202
IPIIPI00328354   IPI00398845   IPI00909673   IPI00383078   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5V3
IntAct (EBI)Q9Y5V3
FunCoupENSG00000179222
BioGRIDMAGED1
STRING (EMBL)MAGED1
ZODIACMAGED1
Ontologies - Pathways
QuickGOQ9Y5V3
Ontology : AmiGOchromatin  transcription coactivator activity  protein binding  nucleus  cytoplasm  plasma membrane  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  circadian regulation of gene expression  regulation of circadian rhythm  identical protein binding  regulation of apoptotic process  protein complex  positive regulation of MAP kinase activity  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  negative regulation of epithelial cell proliferation  positive regulation of branching involved in ureteric bud morphogenesis  positive regulation of apoptotic signaling pathway  
Ontology : EGO-EBIchromatin  transcription coactivator activity  protein binding  nucleus  cytoplasm  plasma membrane  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  circadian regulation of gene expression  regulation of circadian rhythm  identical protein binding  regulation of apoptotic process  protein complex  positive regulation of MAP kinase activity  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  negative regulation of epithelial cell proliferation  positive regulation of branching involved in ureteric bud morphogenesis  positive regulation of apoptotic signaling pathway  
NDEx NetworkMAGED1
Atlas of Cancer Signalling NetworkMAGED1
Wikipedia pathwaysMAGED1
Orthology - Evolution
OrthoDB9500
GeneTree (enSembl)ENSG00000179222
Phylogenetic Trees/Animal Genes : TreeFamMAGED1
HOVERGENQ9Y5V3
HOGENOMQ9Y5V3
Homologs : HomoloGeneMAGED1
Homology/Alignments : Family Browser (UCSC)MAGED1
Gene fusions - Rearrangements
Fusion : QuiverMAGED1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGED1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGED1
dbVarMAGED1
ClinVarMAGED1
1000_GenomesMAGED1 
Exome Variant ServerMAGED1
ExAC (Exome Aggregation Consortium)ENSG00000179222
GNOMAD BrowserENSG00000179222
Genetic variants : HAPMAP9500
Genomic Variants (DGV)MAGED1 [DGVbeta]
DECIPHERMAGED1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGED1 
Mutations
ICGC Data PortalMAGED1 
TCGA Data PortalMAGED1 
Broad Tumor PortalMAGED1
OASIS PortalMAGED1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGED1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGED1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGED1
DgiDB (Drug Gene Interaction Database)MAGED1
DoCM (Curated mutations)MAGED1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGED1 (select a term)
intoGenMAGED1
Cancer3DMAGED1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300224   
Orphanet
DisGeNETMAGED1
MedgenMAGED1
Genetic Testing Registry MAGED1
NextProtQ9Y5V3 [Medical]
TSGene9500
GENETestsMAGED1
Target ValidationMAGED1
Huge Navigator MAGED1 [HugePedia]
snp3D : Map Gene to Disease9500
BioCentury BCIQMAGED1
ClinGenMAGED1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9500
Chemical/Pharm GKB GenePA30559
Clinical trialMAGED1
Miscellaneous
canSAR (ICR)MAGED1 (select the gene name)
Probes
Litterature
PubMed76 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGED1
EVEXMAGED1
GoPubMedMAGED1
iHOPMAGED1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:34:42 CEST 2018
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