Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MAGED1 (MAGE family member D1)

Identity

Alias (NCBI)DLXIN-1
NRAGE
HGNC (Hugo) MAGED1
HGNC Alias symbNRAGE
DLXIN-1
HGNC Previous namemelanoma antigen family D1
LocusID (NCBI) 9500
Atlas_Id 41261
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 51893623 and ends at 51902354 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LGALS1 (22q13.1) / MAGED1 (Xp11.22)MAGED1 (Xp11.22) / LUC7L (16p13.3)MAGED1 (Xp11.22) / MAGED1 (Xp11.22)
MAGED1 (Xp11.22) / RAB18 (10p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MAGED1   6813
Cards
Entrez_Gene (NCBI)MAGED1    MAGE family member D1
AliasesDLXIN-1; NRAGE
GeneCards (Weizmann)MAGED1
Ensembl hg19 (Hinxton)ENSG00000179222 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179222 [Gene_View]  ENSG00000179222 [Sequence]  chrX:51893623-51902354 [Contig_View]  MAGED1 [Vega]
ICGC DataPortalENSG00000179222
TCGA cBioPortalMAGED1
AceView (NCBI)MAGED1
Genatlas (Paris)MAGED1
SOURCE (Princeton)MAGED1
Genetics Home Reference (NIH)MAGED1
Genomic and cartography
GoldenPath hg38 (UCSC)MAGED1  -     chrX:51893623-51902354 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGED1  -     Xp11.22   [Description]    (hg19-Feb_2009)
GoldenPathMAGED1 - Xp11.22 [CytoView hg19]  MAGED1 - Xp11.22 [CytoView hg38]
ImmunoBaseENSG00000179222
genome Data Viewer NCBIMAGED1 [Mapview hg19]  
OMIM300224   
Gene and transcription
Genbank (Entrez)AF124440 AF132205 AF217963 AF258554 AF300328
RefSeq transcript (Entrez)NM_001005332 NM_001005333 NM_006986
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGED1
Alternative Splicing GalleryENSG00000179222
Gene ExpressionMAGED1 [ NCBI-GEO ]   MAGED1 [ EBI - ARRAY_EXPRESS ]   MAGED1 [ SEEK ]   MAGED1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGED1 [ Firebrowse - Broad ]
GenevisibleExpression of MAGED1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9500
GTEX Portal (Tissue expression)MAGED1
Human Protein AtlasENSG00000179222-MAGED1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5V3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5V3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5V3
Splice isoforms : SwissVarQ9Y5V3
PhosPhoSitePlusQ9Y5V3
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE    MAGE_WH1    MAGE_WH2    MAGED1    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)   
Domain families : Pfam (NCBI)pfam01454   
Domain families : Smart (EMBL)MAGE (SM01373)  
Conserved Domain (NCBI)MAGED1
Blocks (Seattle)MAGED1
SuperfamilyQ9Y5V3
Human Protein Atlas [tissue]ENSG00000179222-MAGED1 [tissue]
Peptide AtlasQ9Y5V3
HPRD02202
IPIIPI00328354   IPI00398845   IPI00909673   IPI00383078   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5V3
IntAct (EBI)Q9Y5V3
BioGRIDMAGED1
STRING (EMBL)MAGED1
ZODIACMAGED1
Ontologies - Pathways
QuickGOQ9Y5V3
Ontology : AmiGOchromatin  protein binding  nucleus  cytoplasm  plasma membrane  regulation of transcription, DNA-templated  circadian regulation of gene expression  protein-containing complex  identical protein binding  regulation of apoptotic process  negative regulation of epithelial cell proliferation  
Ontology : EGO-EBIchromatin  protein binding  nucleus  cytoplasm  plasma membrane  regulation of transcription, DNA-templated  circadian regulation of gene expression  protein-containing complex  identical protein binding  regulation of apoptotic process  negative regulation of epithelial cell proliferation  
Pathways : KEGGNeurotrophin signaling pathway   
NDEx NetworkMAGED1
Atlas of Cancer Signalling NetworkMAGED1
Wikipedia pathwaysMAGED1
Orthology - Evolution
OrthoDB9500
GeneTree (enSembl)ENSG00000179222
Phylogenetic Trees/Animal Genes : TreeFamMAGED1
HOGENOMQ9Y5V3
Homologs : HomoloGeneMAGED1
Homology/Alignments : Family Browser (UCSC)MAGED1
Gene fusions - Rearrangements
Fusion : QuiverMAGED1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGED1 [hg38]
dbVarMAGED1
ClinVarMAGED1
MonarchMAGED1
1000_GenomesMAGED1 
Exome Variant ServerMAGED1
GNOMAD BrowserENSG00000179222
Varsome BrowserMAGED1
Genomic Variants (DGV)MAGED1 [DGVbeta]
DECIPHERMAGED1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGED1 
Mutations
ICGC Data PortalMAGED1 
TCGA Data PortalMAGED1 
Broad Tumor PortalMAGED1
OASIS PortalMAGED1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGED1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMAGED1
Mutations and Diseases : HGMDMAGED1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGED1
DgiDB (Drug Gene Interaction Database)MAGED1
DoCM (Curated mutations)MAGED1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGED1 (select a term)
intoGenMAGED1
Cancer3DMAGED1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300224   
Orphanet
DisGeNETMAGED1
MedgenMAGED1
Genetic Testing Registry MAGED1
NextProtQ9Y5V3 [Medical]
GENETestsMAGED1
Target ValidationMAGED1
Huge Navigator MAGED1 [HugePedia]
ClinGenMAGED1
Clinical trials, drugs, therapy
MyCancerGenomeMAGED1
Protein Interactions : CTD
Pharm GKB GenePA30559
PharosQ9Y5V3
Clinical trialMAGED1
Miscellaneous
canSAR (ICR)MAGED1 (select the gene name)
HarmonizomeMAGED1
DataMed IndexMAGED1
Probes
Litterature
PubMed116 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMAGED1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:30:41 CET 2021
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