| Nomenclature |
|---|
| HGNC (Hugo) | MAGED1 6813 |
| Cards |
|---|
| Entrez_Gene (NCBI) | MAGED1 9500 MAGE family member D1 |
| Aliases | DLXIN-1; NRAGE |
| GeneCards (Weizmann) | MAGED1 |
| Ensembl hg19 (Hinxton) | ENSG00000179222 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000179222 [Gene_View] chrX:51803059-51902356 [Contig_View] MAGED1 [Vega] |
| ICGC DataPortal | ENSG00000179222 |
| TCGA cBioPortal | MAGED1 |
| AceView (NCBI) | MAGED1 |
| Genatlas (Paris) | MAGED1 |
| WikiGenes | 9500 |
| SOURCE (Princeton) | MAGED1 |
| Genetics Home Reference (NIH) | MAGED1 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | MAGED1 - chrX:51803059-51902356 + Xp11.22 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | MAGED1 - Xp11.22 [Description] (hg19-Feb_2009) |
| Ensembl | MAGED1 - Xp11.22 [CytoView hg19] MAGED1 - Xp11.22 [CytoView hg38] |
| Mapping of homologs : NCBI | MAGED1 [Mapview hg19] MAGED1 [Mapview hg38] |
| OMIM | 300224 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AF124440 AF132205 AF217963 AF258554 AF300328 |
| RefSeq transcript (Entrez) | NM_001005332 NM_001005333 NM_006986 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | MAGED1 |
| Cluster EST : Unigene | Hs.5258 [ NCBI ] |
| CGAP (NCI) | Hs.5258 |
| Alternative Splicing Gallery | ENSG00000179222 |
| Gene Expression | MAGED1 [ NCBI-GEO ] MAGED1 [ EBI - ARRAY_EXPRESS ]
MAGED1 [ SEEK ] MAGED1 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | MAGED1 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevisible | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 9500 |
| GTEX Portal (Tissue expression) | MAGED1 |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q9Y5V3 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q9Y5V3 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q9Y5V3 |
| Splice isoforms : SwissVar | Q9Y5V3 |
| PhosPhoSitePlus | Q9Y5V3 |
| Domaine pattern : Prosite (Expaxy) | MAGE (PS50838) |
| Domains : Interpro (EBI) | MAGED1 MHD_dom |
| Domain families : Pfam (Sanger) | MAGE (PF01454) |
| Domain families : Pfam (NCBI) | pfam01454 |
| Domain families : Smart (EMBL) | MAGE (SM01373) |
| Conserved Domain (NCBI) | MAGED1 |
| DMDM Disease mutations | 9500 |
| Blocks (Seattle) | MAGED1 |
| Superfamily | Q9Y5V3 |
| Human Protein Atlas | ENSG00000179222 |
| Peptide Atlas | Q9Y5V3 |
| HPRD | 02202 |
| IPI | IPI00328354 IPI00398845 IPI00909673 IPI00383078 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q9Y5V3 |
| IntAct (EBI) | Q9Y5V3 |
| FunCoup | ENSG00000179222 |
| BioGRID | MAGED1 |
| STRING (EMBL) | MAGED1 |
| ZODIAC | MAGED1 |
| Ontologies - Pathways |
|---|
| QuickGO | Q9Y5V3 |
| Ontology : AmiGO | chromatin transcription coactivator activity protein binding nucleus cytoplasm plasma membrane regulation of transcription, DNA-templated regulation of transcription from RNA polymerase II promoter circadian regulation of gene expression regulation of circadian rhythm identical protein binding regulation of apoptotic process protein complex positive regulation of MAP kinase activity negative regulation of transcription, DNA-templated positive regulation of transcription, DNA-templated negative regulation of epithelial cell proliferation positive regulation of branching involved in ureteric bud morphogenesis positive regulation of apoptotic signaling pathway |
| Ontology : EGO-EBI | chromatin transcription coactivator activity protein binding nucleus cytoplasm plasma membrane regulation of transcription, DNA-templated regulation of transcription from RNA polymerase II promoter circadian regulation of gene expression regulation of circadian rhythm identical protein binding regulation of apoptotic process protein complex positive regulation of MAP kinase activity negative regulation of transcription, DNA-templated positive regulation of transcription, DNA-templated negative regulation of epithelial cell proliferation positive regulation of branching involved in ureteric bud morphogenesis positive regulation of apoptotic signaling pathway |
| Pathways : KEGG | Neurotrophin signaling pathway |
| NDEx Network | MAGED1 |
| Atlas of Cancer Signalling Network | MAGED1 |
| Wikipedia pathways | MAGED1 |
| Orthology - Evolution |
|---|
| OrthoDB | 9500 |
| GeneTree (enSembl) | ENSG00000179222 |
| Phylogenetic Trees/Animal Genes : TreeFam | MAGED1 |
| HOVERGEN | Q9Y5V3 |
| HOGENOM | Q9Y5V3 |
| Homologs : HomoloGene | MAGED1 |
| Homology/Alignments : Family Browser (UCSC) | MAGED1 |
| Gene fusions - Rearrangements |
|---|
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | MAGED1 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | MAGED1 |
| dbVar | MAGED1 |
| ClinVar | MAGED1 |
| 1000_Genomes | MAGED1 |
| Exome Variant Server | MAGED1 |
| ExAC (Exome Aggregation Consortium) | MAGED1 (select the gene name) |
| Genetic variants : HAPMAP | 9500 |
| Genomic Variants (DGV) | MAGED1 [DGVbeta] |
| DECIPHER | MAGED1 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | MAGED1 |
| Mutations |
|---|
| ICGC Data Portal | MAGED1 |
| TCGA Data Portal | MAGED1 |
| Broad Tumor Portal | MAGED1 |
| OASIS Portal | MAGED1 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | MAGED1 [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | MAGED1 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| LOVD (Leiden Open Variation Database) | X-chromosome gene database |
| BioMuta | search MAGED1 |
| DgiDB (Drug Gene Interaction Database) | MAGED1 |
| DoCM (Curated mutations) | MAGED1 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | MAGED1 (select a term) |
| intoGen | MAGED1 |
| Cancer3D | MAGED1(select the gene name) |
| Impact of mutations | [PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 300224 |
| Orphanet | |
| Medgen | MAGED1 |
| Genetic Testing Registry | MAGED1
|
| NextProt | Q9Y5V3 [Medical] |
| TSGene | 9500 |
| GENETests | MAGED1 |
| Target Validation | MAGED1 |
| Huge Navigator |
MAGED1 [HugePedia] |
| snp3D : Map Gene to Disease | 9500 |
| BioCentury BCIQ | MAGED1 |
| ClinGen | MAGED1 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 9500 |
| Chemical/Pharm GKB Gene | PA30559 |
| Clinical trial | MAGED1 |
| Miscellaneous |
|---|
| canSAR (ICR) | MAGED1 (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 71 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | MAGED1 |
| EVEX | MAGED1 |
| GoPubMed | MAGED1 |
| iHOP | MAGED1 |
