| Nomenclature |
|---|
| HGNC (Hugo) | MAGED1 6813 |
| Cards |
|---|
| Entrez_Gene (NCBI) | MAGED1 9500 MAGE family member D1 |
| Aliases | DLXIN-1; NRAGE |
| GeneCards (Weizmann) | MAGED1 |
| Ensembl hg19 (Hinxton) | ENSG00000179222 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000179222 [Gene_View] ENSG00000179222 [Sequence] chrX:51893602-51902356 [Contig_View] MAGED1 [Vega] |
| ICGC DataPortal | ENSG00000179222 |
| TCGA cBioPortal | MAGED1 |
| AceView (NCBI) | MAGED1 |
| Genatlas (Paris) | MAGED1 |
| WikiGenes | 9500 |
| SOURCE (Princeton) | MAGED1 |
| Genetics Home Reference (NIH) | MAGED1 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | MAGED1 - chrX:51893602-51902356 + Xp11.22 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | MAGED1 - Xp11.22 [Description] (hg19-Feb_2009) |
MAGED1 - Xp11.22 [CytoView hg19] MAGED1 - Xp11.22 [CytoView hg38] |
| Mapping of homologs : NCBI | MAGED1 [Mapview hg19] MAGED1 [Mapview hg38] |
| OMIM | 300224 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AF124440 AF132205 AF217963 AF258554 AF300328 |
| RefSeq transcript (Entrez) | NM_001005332 NM_001005333 NM_006986 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | MAGED1 |
| Cluster EST : Unigene | Hs.5258 [ NCBI ] |
| CGAP (NCI) | Hs.5258 |
| Alternative Splicing Gallery | ENSG00000179222 |
| Gene Expression | MAGED1 [ NCBI-GEO ] MAGED1 [ EBI - ARRAY_EXPRESS ]
MAGED1 [ SEEK ] MAGED1 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | MAGED1 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 9500 |
| GTEX Portal (Tissue expression) | MAGED1 |
| Human Protein Atlas | ENSG00000179222-MAGED1 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q9Y5V3 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q9Y5V3 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q9Y5V3 |
| Splice isoforms : SwissVar | Q9Y5V3 |
| PhosPhoSitePlus | Q9Y5V3 |
| Domaine pattern : Prosite (Expaxy) | MAGE (PS50838) |
| Domains : Interpro (EBI) | MAGE MAGED1 MHD_dom |
| Domain families : Pfam (Sanger) | MAGE (PF01454) |
| Domain families : Pfam (NCBI) | pfam01454 |
| Domain families : Smart (EMBL) | MAGE (SM01373) |
| Conserved Domain (NCBI) | MAGED1 |
| DMDM Disease mutations | 9500 |
| Blocks (Seattle) | MAGED1 |
| Superfamily | Q9Y5V3 |
| Human Protein Atlas [tissue] | ENSG00000179222-MAGED1 [tissue] |
| Peptide Atlas | Q9Y5V3 |
| HPRD | 02202 |
| IPI | IPI00328354 IPI00398845 IPI00909673 IPI00383078 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q9Y5V3 |
| IntAct (EBI) | Q9Y5V3 |
| FunCoup | ENSG00000179222 |
| BioGRID | MAGED1 |
| STRING (EMBL) | MAGED1 |
| ZODIAC | MAGED1 |
| Ontologies - Pathways |
|---|
| QuickGO | Q9Y5V3 |
| Ontology : AmiGO | chromatin transcription coactivator activity protein binding nucleus cytoplasm plasma membrane regulation of transcription, DNA-templated regulation of transcription by RNA polymerase II circadian regulation of gene expression protein-containing complex regulation of circadian rhythm identical protein binding regulation of apoptotic process positive regulation of MAP kinase activity negative regulation of transcription, DNA-templated positive regulation of transcription, DNA-templated negative regulation of epithelial cell proliferation positive regulation of branching involved in ureteric bud morphogenesis positive regulation of apoptotic signaling pathway |
| Ontology : EGO-EBI | chromatin transcription coactivator activity protein binding nucleus cytoplasm plasma membrane regulation of transcription, DNA-templated regulation of transcription by RNA polymerase II circadian regulation of gene expression protein-containing complex regulation of circadian rhythm identical protein binding regulation of apoptotic process positive regulation of MAP kinase activity negative regulation of transcription, DNA-templated positive regulation of transcription, DNA-templated negative regulation of epithelial cell proliferation positive regulation of branching involved in ureteric bud morphogenesis positive regulation of apoptotic signaling pathway |
| Pathways : KEGG | Neurotrophin signaling pathway |
| NDEx Network | MAGED1 |
| Atlas of Cancer Signalling Network | MAGED1 |
| Wikipedia pathways | MAGED1 |
| Orthology - Evolution |
|---|
| OrthoDB | 9500 |
| GeneTree (enSembl) | ENSG00000179222 |
| Phylogenetic Trees/Animal Genes : TreeFam | MAGED1 |
| HOGENOM | Q9Y5V3 |
| Homologs : HomoloGene | MAGED1 |
| Homology/Alignments : Family Browser (UCSC) | MAGED1 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | MAGED1 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | MAGED1 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | MAGED1 |
| dbVar | MAGED1 |
| ClinVar | MAGED1 |
| 1000_Genomes | MAGED1 |
| Exome Variant Server | MAGED1 |
| ExAC (Exome Aggregation Consortium) | ENSG00000179222 |
| GNOMAD Browser | ENSG00000179222 |
| Varsome Browser | MAGED1 |
| Genetic variants : HAPMAP | 9500 |
| Genomic Variants (DGV) | MAGED1 [DGVbeta] |
| DECIPHER | MAGED1 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | MAGED1 |
| Mutations |
|---|
| ICGC Data Portal | MAGED1 |
| TCGA Data Portal | MAGED1 |
| Broad Tumor Portal | MAGED1 |
| OASIS Portal | MAGED1 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | MAGED1 [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | MAGED1 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| LOVD (Leiden Open Variation Database) | X-chromosome gene database |
| BioMuta | search MAGED1 |
| DgiDB (Drug Gene Interaction Database) | MAGED1 |
| DoCM (Curated mutations) | MAGED1 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | MAGED1 (select a term) |
| intoGen | MAGED1 |
| Cancer3D | MAGED1(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 300224 |
| Orphanet | |
| DisGeNET | MAGED1 |
| Medgen | MAGED1 |
| Genetic Testing Registry | MAGED1
|
| NextProt | Q9Y5V3 [Medical] |
| TSGene | 9500 |
| GENETests | MAGED1 |
| Target Validation | MAGED1 |
| Huge Navigator |
MAGED1 [HugePedia] |
| snp3D : Map Gene to Disease | 9500 |
| BioCentury BCIQ | MAGED1 |
| ClinGen | MAGED1 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 9500 |
| Chemical/Pharm GKB Gene | PA30559 |
| Clinical trial | MAGED1 |
| Miscellaneous |
|---|
| canSAR (ICR) | MAGED1 (select the gene name) |
| DataMed Index | MAGED1 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 85 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | MAGED1 |
| EVEX | MAGED1 |
| GoPubMed | MAGED1 |
| iHOP | MAGED1 |
