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MAGED2 (MAGE family member D2)

Identity

Alias (NCBI)11B6
BARTS5
BCG-1
BCG1
HCA10
MAGE-D2
HGNC (Hugo) MAGED2
HGNC Alias symbJCL-1
BCG1
11B6
MAGE-D2
HCA10
MAGED
MGC8386
HGNC Alias namehepatocellular carcinoma associated protein
 breast cancer associated gene 1
 melanoma-associated antigen D2
 hepatocellular carcinoma-associated protein HCA10
HGNC Previous namemelanoma antigen family D2
LocusID (NCBI) 10916
Atlas_Id 41262
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 54809081 and ends at 54816015 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACYP2 (2p16.2) / MAGED2 (Xp11.21)GBE1 (3p12.2) / MAGED2 (Xp11.21)INS-IGF2 (11p15.5) / MAGED2 (Xp11.21)
MAGED2 (Xp11.21) / HNRNPDL (4q21.22)MAGED2 (Xp11.21) / MAGED2 (Xp11.21)MAGED2 (Xp11.21) / MDH1 (2p15)
MAGED2 (Xp11.21) / MPHOSPH8 (13q12.11)MAGED2 (Xp11.21) / SCAMP4 (19p13.3)SLIT3 (5q34) / MAGED2 (Xp11.21)
MAGED2 Xp11.21 / MPHOSPH8 13q12.11MAGED2 Xp11.21 / SCAMP4 19p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MAGED2   16353
Cards
Entrez_Gene (NCBI)MAGED2    MAGE family member D2
Aliases11B6; BARTS5; BCG-1; BCG1; 
HCA10; MAGE-D2
GeneCards (Weizmann)MAGED2
Ensembl hg19 (Hinxton)ENSG00000102316 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102316 [Gene_View]  ENSG00000102316 [Sequence]  chrX:54809081-54816015 [Contig_View]  MAGED2 [Vega]
ICGC DataPortalENSG00000102316
TCGA cBioPortalMAGED2
AceView (NCBI)MAGED2
Genatlas (Paris)MAGED2
SOURCE (Princeton)MAGED2
Genetics Home Reference (NIH)MAGED2
Genomic and cartography
GoldenPath hg38 (UCSC)MAGED2  -     chrX:54809081-54816015 +  Xp11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGED2  -     Xp11.21   [Description]    (hg19-Feb_2009)
GoldenPathMAGED2 - Xp11.21 [CytoView hg19]  MAGED2 - Xp11.21 [CytoView hg38]
ImmunoBaseENSG00000102316
Genome Data Viewer NCBIMAGED2 [Mapview hg19]  
OMIM300470   300971   
Gene and transcription
Genbank (Entrez)AF126181 AF128527 AF128528 AF148815 AF320907
RefSeq transcript (Entrez)NM_014599 NM_177433 NM_201222
Consensus coding sequences : CCDS (NCBI)MAGED2
Gene ExpressionMAGED2 [ NCBI-GEO ]   MAGED2 [ EBI - ARRAY_EXPRESS ]   MAGED2 [ SEEK ]   MAGED2 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGED2 [ Firebrowse - Broad ]
GenevisibleExpression of MAGED2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10916
GTEX Portal (Tissue expression)MAGED2
Human Protein AtlasENSG00000102316-MAGED2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UNF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UNF1
PhosPhoSitePlusQ9UNF1
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE    MAGE_WH1    MAGE_WH2    MAGED2    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)   
Domain families : Pfam (NCBI)pfam01454   
Domain families : Smart (EMBL)MAGE (SM01373)  
Conserved Domain (NCBI)MAGED2
SuperfamilyQ9UNF1
AlphaFold pdb e-kbQ9UNF1   
Human Protein Atlas [tissue]ENSG00000102316-MAGED2 [tissue]
HPRD06630
Protein Interaction databases
DIP (DOE-UCLA)Q9UNF1
IntAct (EBI)Q9UNF1
BioGRIDMAGED2
STRING (EMBL)MAGED2
ZODIACMAGED2
Ontologies - Pathways
QuickGOQ9UNF1
Ontology : AmiGOplatelet degranulation  protein binding  extracellular region  nucleoplasm  nucleolus  cytosol  female pregnancy  membrane  platelet alpha granule lumen  renal sodium ion absorption  
Ontology : EGO-EBIplatelet degranulation  protein binding  extracellular region  nucleoplasm  nucleolus  cytosol  female pregnancy  membrane  platelet alpha granule lumen  renal sodium ion absorption  
NDEx NetworkMAGED2
Atlas of Cancer Signalling NetworkMAGED2
Wikipedia pathwaysMAGED2
Orthology - Evolution
OrthoDB10916
GeneTree (enSembl)ENSG00000102316
Phylogenetic Trees/Animal Genes : TreeFamMAGED2
Homologs : HomoloGeneMAGED2
Homology/Alignments : Family Browser (UCSC)MAGED2
Gene fusions - Rearrangements
Fusion : MitelmanMAGED2/MPHOSPH8 [Xp11.21/13q12.11]  
Fusion : MitelmanMAGED2/SCAMP4 [Xp11.21/19p13.3]  
Fusion : QuiverMAGED2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGED2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGED2
dbVarMAGED2
ClinVarMAGED2
MonarchMAGED2
1000_GenomesMAGED2 
Exome Variant ServerMAGED2
GNOMAD BrowserENSG00000102316
Varsome BrowserMAGED2
ACMGMAGED2 variants
VarityQ9UNF1
Genomic Variants (DGV)MAGED2 [DGVbeta]
DECIPHERMAGED2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGED2 
Mutations
ICGC Data PortalMAGED2 
TCGA Data PortalMAGED2 
Broad Tumor PortalMAGED2
OASIS PortalMAGED2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGED2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMAGED2
Mutations and Diseases : HGMDMAGED2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMAGED2
DgiDB (Drug Gene Interaction Database)MAGED2
DoCM (Curated mutations)MAGED2
CIViC (Clinical Interpretations of Variants in Cancer)MAGED2
Cancer3DMAGED2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300470    300971   
Orphanet12437   
DisGeNETMAGED2
MedgenMAGED2
Genetic Testing Registry MAGED2
NextProtQ9UNF1 [Medical]
GENETestsMAGED2
Target ValidationMAGED2
Huge Navigator MAGED2 [HugePedia]
ClinGenMAGED2
Clinical trials, drugs, therapy
MyCancerGenomeMAGED2
Protein Interactions : CTDMAGED2
Pharm GKB GenePA30560
PharosQ9UNF1
Clinical trialMAGED2
Miscellaneous
canSAR (ICR)MAGED2
HarmonizomeMAGED2
DataMed IndexMAGED2
Probes
Litterature
PubMed99 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMAGED2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:17:32 CEST 2021

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