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MAGED4 (melanoma antigen family D4)

Identity

Alias_namesmelanoma antigen family D4
Alias_symbol (synonym)MAGE1
MGC3210
KIAA1859
MAGE-E1
Other aliasMAGEE1
HGNC (Hugo) MAGED4
LocusID (NCBI) 728239
Atlas_Id 47640
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 51927919 and ends at 51935366 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGED4   23793
Cards
Entrez_Gene (NCBI)MAGED4  728239  melanoma antigen family D4
AliasesMAGE-E1; MAGE1; MAGEE1
GeneCards (Weizmann)MAGED4
Ensembl hg19 (Hinxton)ENSG00000154545 [Gene_View]  chrX:51927919-51935366 [Contig_View]  MAGED4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000154545 [Gene_View]  chrX:51927919-51935366 [Contig_View]  MAGED4 [Vega]
ICGC DataPortalENSG00000154545
TCGA cBioPortalMAGED4
AceView (NCBI)MAGED4
Genatlas (Paris)MAGED4
WikiGenes728239
SOURCE (Princeton)MAGED4
Genetics Home Reference (NIH)MAGED4
Genomic and cartography
GoldenPath hg19 (UCSC)MAGED4  -     chrX:51927919-51935366 +  Xp11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAGED4  -     Xp11.22   [Description]    (hg38-Dec_2013)
EnsemblMAGED4 - Xp11.22 [CytoView hg19]  MAGED4 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBIMAGED4 [Mapview hg19]  MAGED4 [Mapview hg38]
OMIM300702   
Gene and transcription
Genbank (Entrez)AB040527 AB040528 AB040529 AB058762 AF320908
RefSeq transcript (Entrez)NM_001098800 NM_001272061 NM_001272062 NM_001272063
RefSeq genomic (Entrez)NC_000023 NT_011630
Consensus coding sequences : CCDS (NCBI)MAGED4
Cluster EST : UnigeneHs.733143 [ NCBI ]
CGAP (NCI)Hs.733143
Alternative Splicing GalleryENSG00000154545
Gene ExpressionMAGED4 [ NCBI-GEO ]   MAGED4 [ EBI - ARRAY_EXPRESS ]   MAGED4 [ SEEK ]   MAGED4 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGED4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728239
GTEX Portal (Tissue expression)MAGED4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JG8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JG8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JG8
Splice isoforms : SwissVarQ96JG8
PhosPhoSitePlusQ96JG8
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)   
Domain families : Pfam (NCBI)pfam01454   
Conserved Domain (NCBI)MAGED4
DMDM Disease mutations728239
Blocks (Seattle)MAGED4
SuperfamilyQ96JG8
Human Protein AtlasENSG00000154545
Peptide AtlasQ96JG8
Protein Interaction databases
DIP (DOE-UCLA)Q96JG8
IntAct (EBI)Q96JG8
FunCoupENSG00000154545
BioGRIDMAGED4
STRING (EMBL)MAGED4
ZODIACMAGED4
Ontologies - Pathways
QuickGOQ96JG8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMAGED4
Atlas of Cancer Signalling NetworkMAGED4
Wikipedia pathwaysMAGED4
Orthology - Evolution
OrthoDB728239
GeneTree (enSembl)ENSG00000154545
Phylogenetic Trees/Animal Genes : TreeFamMAGED4
HOVERGENQ96JG8
HOGENOMQ96JG8
Homologs : HomoloGeneMAGED4
Homology/Alignments : Family Browser (UCSC)MAGED4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGED4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGED4
dbVarMAGED4
ClinVarMAGED4
1000_GenomesMAGED4 
Exome Variant ServerMAGED4
ExAC (Exome Aggregation Consortium)MAGED4 (select the gene name)
Genetic variants : HAPMAP728239
Genomic Variants (DGV)MAGED4 [DGVbeta]
DECIPHER (Syndromes)X:51927919-51935366  ENSG00000154545
CONAN: Copy Number AnalysisMAGED4 
Mutations
ICGC Data PortalMAGED4 
TCGA Data PortalMAGED4 
Broad Tumor PortalMAGED4
OASIS PortalMAGED4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGED4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGED4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAGED4
DgiDB (Drug Gene Interaction Database)MAGED4
DoCM (Curated mutations)MAGED4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGED4 (select a term)
intoGenMAGED4
Cancer3DMAGED4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300702   
Orphanet
MedgenMAGED4
Genetic Testing Registry MAGED4
NextProtQ96JG8 [Medical]
TSGene728239
GENETestsMAGED4
Huge Navigator MAGED4 [HugePedia]
snp3D : Map Gene to Disease728239
BioCentury BCIQMAGED4
ClinGenMAGED4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728239
Chemical/Pharm GKB GenePA134957670
Clinical trialMAGED4
Miscellaneous
canSAR (ICR)MAGED4 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGED4
EVEXMAGED4
GoPubMedMAGED4
iHOPMAGED4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:14:14 CET 2017

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