Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MAGED4B (MAGE family member D4B)

Identity

Alias_namesmelanoma antigen family D4B
Other alias-
HGNC (Hugo) MAGED4B
LocusID (NCBI) 81557
Atlas_Id 41263
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 52061827 and ends at 52069272 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C1QTNF1 (17q25.3) / MAGED4B (Xp11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGED4B   22880
Cards
Entrez_Gene (NCBI)MAGED4B  81557  MAGE family member D4B
Aliases
GeneCards (Weizmann)MAGED4B
Ensembl hg19 (Hinxton)ENSG00000187243 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187243 [Gene_View]  chrX:52061827-52069272 [Contig_View]  MAGED4B [Vega]
ICGC DataPortalENSG00000187243
TCGA cBioPortalMAGED4B
AceView (NCBI)MAGED4B
Genatlas (Paris)MAGED4B
WikiGenes81557
SOURCE (Princeton)MAGED4B
Genetics Home Reference (NIH)MAGED4B
Genomic and cartography
GoldenPath hg38 (UCSC)MAGED4B  -     chrX:52061827-52069272 -  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGED4B  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblMAGED4B - Xp11.22 [CytoView hg19]  MAGED4B - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBIMAGED4B [Mapview hg19]  MAGED4B [Mapview hg38]
OMIM300765   
Gene and transcription
Genbank (Entrez)AB040527 AB040528 AB040529 AB058762 AF320908
RefSeq transcript (Entrez)NM_001242362 NM_030801 NM_177535 NM_177537
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGED4B
Cluster EST : UnigeneHs.733143 [ NCBI ]
CGAP (NCI)Hs.733143
Alternative Splicing GalleryENSG00000187243
Gene ExpressionMAGED4B [ NCBI-GEO ]   MAGED4B [ EBI - ARRAY_EXPRESS ]   MAGED4B [ SEEK ]   MAGED4B [ MEM ]
Gene Expression Viewer (FireBrowse)MAGED4B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81557
GTEX Portal (Tissue expression)MAGED4B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JG8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JG8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JG8
Splice isoforms : SwissVarQ96JG8
PhosPhoSitePlusQ96JG8
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGED4    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)   
Domain families : Pfam (NCBI)pfam01454   
Domain families : Smart (EMBL)MAGE (SM01373)  
Conserved Domain (NCBI)MAGED4B
DMDM Disease mutations81557
Blocks (Seattle)MAGED4B
SuperfamilyQ96JG8
Human Protein AtlasENSG00000187243
Peptide AtlasQ96JG8
HPRD06631
IPIIPI00335512   IPI00396651   IPI00387072   IPI00902794   IPI00966863   IPI00964465   IPI00965617   IPI00965129   
Protein Interaction databases
DIP (DOE-UCLA)Q96JG8
IntAct (EBI)Q96JG8
FunCoupENSG00000187243
BioGRIDMAGED4B
STRING (EMBL)MAGED4B
ZODIACMAGED4B
Ontologies - Pathways
QuickGOQ96JG8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMAGED4B
Atlas of Cancer Signalling NetworkMAGED4B
Wikipedia pathwaysMAGED4B
Orthology - Evolution
OrthoDB81557
GeneTree (enSembl)ENSG00000187243
Phylogenetic Trees/Animal Genes : TreeFamMAGED4B
HOVERGENQ96JG8
HOGENOMQ96JG8
Homologs : HomoloGeneMAGED4B
Homology/Alignments : Family Browser (UCSC)MAGED4B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGED4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGED4B
dbVarMAGED4B
ClinVarMAGED4B
1000_GenomesMAGED4B 
Exome Variant ServerMAGED4B
ExAC (Exome Aggregation Consortium)MAGED4B (select the gene name)
Genetic variants : HAPMAP81557
Genomic Variants (DGV)MAGED4B [DGVbeta]
DECIPHERMAGED4B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGED4B 
Mutations
ICGC Data PortalMAGED4B 
TCGA Data PortalMAGED4B 
Broad Tumor PortalMAGED4B
OASIS PortalMAGED4B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGED4B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGED4B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAGED4B
DgiDB (Drug Gene Interaction Database)MAGED4B
DoCM (Curated mutations)MAGED4B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGED4B (select a term)
intoGenMAGED4B
Cancer3DMAGED4B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300765   
Orphanet
MedgenMAGED4B
Genetic Testing Registry MAGED4B
NextProtQ96JG8 [Medical]
TSGene81557
GENETestsMAGED4B
Target ValidationMAGED4B
Huge Navigator MAGED4B [HugePedia]
snp3D : Map Gene to Disease81557
BioCentury BCIQMAGED4B
ClinGenMAGED4B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81557
Chemical/Pharm GKB GenePA145148472
Clinical trialMAGED4B
Miscellaneous
canSAR (ICR)MAGED4B (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGED4B
EVEXMAGED4B
GoPubMedMAGED4B
iHOPMAGED4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:16:58 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.