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MAGEE2 (MAGE family member E2)

Identity

Alias_namesmelanoma antigen family E2
Alias_symbol (synonym)HCA3
Other alias
HGNC (Hugo) MAGEE2
LocusID (NCBI) 139599
Atlas_Id 40794
Location Xq13.3  [Link to chromosome band Xq13]
Location_base_pair Starts at 75782988 and ends at 75785244 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEE2   24935
Cards
Entrez_Gene (NCBI)MAGEE2  139599  MAGE family member E2
AliasesHCA3
GeneCards (Weizmann)MAGEE2
Ensembl hg19 (Hinxton)ENSG00000186675 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186675 [Gene_View]  ENSG00000186675 [Sequence]  chrX:75782988-75785244 [Contig_View]  MAGEE2 [Vega]
ICGC DataPortalENSG00000186675
TCGA cBioPortalMAGEE2
AceView (NCBI)MAGEE2
Genatlas (Paris)MAGEE2
WikiGenes139599
SOURCE (Princeton)MAGEE2
Genetics Home Reference (NIH)MAGEE2
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEE2  -     chrX:75782988-75785244 -  Xq13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEE2  -     Xq13.3   [Description]    (hg19-Feb_2009)
EnsemblMAGEE2 - Xq13.3 [CytoView hg19]  MAGEE2 - Xq13.3 [CytoView hg38]
Mapping of homologs : NCBIMAGEE2 [Mapview hg19]  MAGEE2 [Mapview hg38]
OMIM300760   
Gene and transcription
Genbank (Entrez)AF490509 AK094624 BC093964 BC111949 DA793762
RefSeq transcript (Entrez)NM_138703
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEE2
Cluster EST : UnigeneHs.356869 [ NCBI ]
CGAP (NCI)Hs.356869
Alternative Splicing GalleryENSG00000186675
Gene ExpressionMAGEE2 [ NCBI-GEO ]   MAGEE2 [ EBI - ARRAY_EXPRESS ]   MAGEE2 [ SEEK ]   MAGEE2 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139599
GTEX Portal (Tissue expression)MAGEE2
Human Protein AtlasENSG00000186675-MAGEE2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TD90   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TD90  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TD90
Splice isoforms : SwissVarQ8TD90
PhosPhoSitePlusQ8TD90
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)   
Domain families : Pfam (NCBI)pfam01454   
Domain families : Smart (EMBL)MAGE (SM01373)  
Conserved Domain (NCBI)MAGEE2
DMDM Disease mutations139599
Blocks (Seattle)MAGEE2
SuperfamilyQ8TD90
Human Protein Atlas [tissue]ENSG00000186675-MAGEE2 [tissue]
Peptide AtlasQ8TD90
HPRD06585
IPIIPI00152487   
Protein Interaction databases
DIP (DOE-UCLA)Q8TD90
IntAct (EBI)Q8TD90
FunCoupENSG00000186675
BioGRIDMAGEE2
STRING (EMBL)MAGEE2
ZODIACMAGEE2
Ontologies - Pathways
QuickGOQ8TD90
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMAGEE2
Atlas of Cancer Signalling NetworkMAGEE2
Wikipedia pathwaysMAGEE2
Orthology - Evolution
OrthoDB139599
GeneTree (enSembl)ENSG00000186675
Phylogenetic Trees/Animal Genes : TreeFamMAGEE2
HOVERGENQ8TD90
HOGENOMQ8TD90
Homologs : HomoloGeneMAGEE2
Homology/Alignments : Family Browser (UCSC)MAGEE2
Gene fusions - Rearrangements
Fusion : QuiverMAGEE2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEE2
dbVarMAGEE2
ClinVarMAGEE2
1000_GenomesMAGEE2 
Exome Variant ServerMAGEE2
ExAC (Exome Aggregation Consortium)ENSG00000186675
GNOMAD BrowserENSG00000186675
Varsome BrowserMAGEE2
Genetic variants : HAPMAP139599
Genomic Variants (DGV)MAGEE2 [DGVbeta]
DECIPHERMAGEE2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEE2 
Mutations
ICGC Data PortalMAGEE2 
TCGA Data PortalMAGEE2 
Broad Tumor PortalMAGEE2
OASIS PortalMAGEE2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEE2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEE2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEE2
DgiDB (Drug Gene Interaction Database)MAGEE2
DoCM (Curated mutations)MAGEE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEE2 (select a term)
intoGenMAGEE2
Cancer3DMAGEE2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300760   
Orphanet
DisGeNETMAGEE2
MedgenMAGEE2
Genetic Testing Registry MAGEE2
NextProtQ8TD90 [Medical]
TSGene139599
GENETestsMAGEE2
Target ValidationMAGEE2
Huge Navigator MAGEE2 [HugePedia]
snp3D : Map Gene to Disease139599
BioCentury BCIQMAGEE2
ClinGenMAGEE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139599
Chemical/Pharm GKB GenePA134923697
Clinical trialMAGEE2
Miscellaneous
canSAR (ICR)MAGEE2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEE2
EVEXMAGEE2
GoPubMedMAGEE2
iHOPMAGEE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:18:34 CET 2018

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