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MAGEF1 (MAGE family member F1)

Identity

Alias_namesmelanoma antigen family F1
Other alias-
HGNC (Hugo) MAGEF1
LocusID (NCBI) 64110
Atlas_Id 41265
Location 3q27.1  [Link to chromosome band 3q27]
Location_base_pair Starts at 184428155 and ends at 184429836 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C16orf45 (16p13.11) / MAGEF1 (3q27.1)MUC4 (3q29) / MAGEF1 (3q27.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEF1   29639
Cards
Entrez_Gene (NCBI)MAGEF1  64110  MAGE family member F1
Aliases
GeneCards (Weizmann)MAGEF1
Ensembl hg19 (Hinxton)ENSG00000177383 [Gene_View]  chr3:184428155-184429836 [Contig_View]  MAGEF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000177383 [Gene_View]  chr3:184428155-184429836 [Contig_View]  MAGEF1 [Vega]
ICGC DataPortalENSG00000177383
TCGA cBioPortalMAGEF1
AceView (NCBI)MAGEF1
Genatlas (Paris)MAGEF1
WikiGenes64110
SOURCE (Princeton)MAGEF1
Genetics Home Reference (NIH)MAGEF1
Genomic and cartography
GoldenPath hg19 (UCSC)MAGEF1  -     chr3:184428155-184429836 -  3q27.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAGEF1  -     3q27.1   [Description]    (hg38-Dec_2013)
EnsemblMAGEF1 - 3q27.1 [CytoView hg19]  MAGEF1 - 3q27.1 [CytoView hg38]
Mapping of homologs : NCBIMAGEF1 [Mapview hg19]  MAGEF1 [Mapview hg38]
OMIM609267   
Gene and transcription
Genbank (Entrez)AF295378 AF320910 BC010056 BQ058163 BQ070043
RefSeq transcript (Entrez)NM_022149
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)MAGEF1
Cluster EST : UnigeneHs.306123 [ NCBI ]
CGAP (NCI)Hs.306123
Alternative Splicing GalleryENSG00000177383
Gene ExpressionMAGEF1 [ NCBI-GEO ]   MAGEF1 [ EBI - ARRAY_EXPRESS ]   MAGEF1 [ SEEK ]   MAGEF1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64110
GTEX Portal (Tissue expression)MAGEF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAY2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAY2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAY2
Splice isoforms : SwissVarQ9HAY2
PhosPhoSitePlusQ9HAY2
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)   
Domain families : Pfam (NCBI)pfam01454   
Conserved Domain (NCBI)MAGEF1
DMDM Disease mutations64110
Blocks (Seattle)MAGEF1
SuperfamilyQ9HAY2
Human Protein AtlasENSG00000177383
Peptide AtlasQ9HAY2
HPRD14348
IPIIPI00005529   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAY2
IntAct (EBI)Q9HAY2
FunCoupENSG00000177383
BioGRIDMAGEF1
STRING (EMBL)MAGEF1
ZODIACMAGEF1
Ontologies - Pathways
QuickGOQ9HAY2
Ontology : AmiGOprotein binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  extracellular exosome  
NDEx NetworkMAGEF1
Atlas of Cancer Signalling NetworkMAGEF1
Wikipedia pathwaysMAGEF1
Orthology - Evolution
OrthoDB64110
GeneTree (enSembl)ENSG00000177383
Phylogenetic Trees/Animal Genes : TreeFamMAGEF1
HOVERGENQ9HAY2
HOGENOMQ9HAY2
Homologs : HomoloGeneMAGEF1
Homology/Alignments : Family Browser (UCSC)MAGEF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEF1
dbVarMAGEF1
ClinVarMAGEF1
1000_GenomesMAGEF1 
Exome Variant ServerMAGEF1
ExAC (Exome Aggregation Consortium)MAGEF1 (select the gene name)
Genetic variants : HAPMAP64110
Genomic Variants (DGV)MAGEF1 [DGVbeta]
DECIPHER (Syndromes)3:184428155-184429836  ENSG00000177383
CONAN: Copy Number AnalysisMAGEF1 
Mutations
ICGC Data PortalMAGEF1 
TCGA Data PortalMAGEF1 
Broad Tumor PortalMAGEF1
OASIS PortalMAGEF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAGEF1
DgiDB (Drug Gene Interaction Database)MAGEF1
DoCM (Curated mutations)MAGEF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEF1 (select a term)
intoGenMAGEF1
Cancer3DMAGEF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609267   
Orphanet
MedgenMAGEF1
Genetic Testing Registry MAGEF1
NextProtQ9HAY2 [Medical]
TSGene64110
GENETestsMAGEF1
Huge Navigator MAGEF1 [HugePedia]
snp3D : Map Gene to Disease64110
BioCentury BCIQMAGEF1
ClinGenMAGEF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64110
Chemical/Pharm GKB GenePA134920978
Clinical trialMAGEF1
Miscellaneous
canSAR (ICR)MAGEF1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEF1
EVEXMAGEF1
GoPubMedMAGEF1
iHOPMAGEF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:08:20 CEST 2017

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