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MAGEH1 (MAGE family member H1)

Identity

Alias_namesmelanoma antigen family H1
Alias_symbol (synonym)APR1
Other aliasAPR-1
MAGEH
HGNC (Hugo) MAGEH1
LocusID (NCBI) 28986
Atlas_Id 42909
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 55452089 and ends at 55453568 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEH1   24092
Cards
Entrez_Gene (NCBI)MAGEH1  28986  MAGE family member H1
AliasesAPR-1; APR1; MAGEH
GeneCards (Weizmann)MAGEH1
Ensembl hg19 (Hinxton)ENSG00000187601 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187601 [Gene_View]  chrX:55452089-55453568 [Contig_View]  MAGEH1 [Vega]
ICGC DataPortalENSG00000187601
TCGA cBioPortalMAGEH1
AceView (NCBI)MAGEH1
Genatlas (Paris)MAGEH1
WikiGenes28986
SOURCE (Princeton)MAGEH1
Genetics Home Reference (NIH)MAGEH1
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEH1  -     chrX:55452089-55453568 +  Xp11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEH1  -     Xp11.21   [Description]    (hg19-Feb_2009)
EnsemblMAGEH1 - Xp11.21 [CytoView hg19]  MAGEH1 - Xp11.21 [CytoView hg38]
Mapping of homologs : NCBIMAGEH1 [Mapview hg19]  MAGEH1 [Mapview hg38]
OMIM300548   
Gene and transcription
Genbank (Entrez)AA634056 AF143235 AF320912 AI191172 AK313527
RefSeq transcript (Entrez)NM_014061
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEH1
Cluster EST : UnigeneHs.279819 [ NCBI ]
CGAP (NCI)Hs.279819
Alternative Splicing GalleryENSG00000187601
Gene ExpressionMAGEH1 [ NCBI-GEO ]   MAGEH1 [ EBI - ARRAY_EXPRESS ]   MAGEH1 [ SEEK ]   MAGEH1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28986
GTEX Portal (Tissue expression)MAGEH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H213   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H213  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H213
Splice isoforms : SwissVarQ9H213
PhosPhoSitePlusQ9H213
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)   
Domain families : Pfam (NCBI)pfam01454   
Domain families : Smart (EMBL)MAGE (SM01373)  
Conserved Domain (NCBI)MAGEH1
DMDM Disease mutations28986
Blocks (Seattle)MAGEH1
SuperfamilyQ9H213
Human Protein AtlasENSG00000187601
Peptide AtlasQ9H213
HPRD06633
IPIIPI00022357   
Protein Interaction databases
DIP (DOE-UCLA)Q9H213
IntAct (EBI)Q9H213
FunCoupENSG00000187601
BioGRIDMAGEH1
STRING (EMBL)MAGEH1
ZODIACMAGEH1
Ontologies - Pathways
QuickGOQ9H213
Ontology : AmiGOprotein binding  cytoplasm  apoptotic process  
Ontology : EGO-EBIprotein binding  cytoplasm  apoptotic process  
NDEx NetworkMAGEH1
Atlas of Cancer Signalling NetworkMAGEH1
Wikipedia pathwaysMAGEH1
Orthology - Evolution
OrthoDB28986
GeneTree (enSembl)ENSG00000187601
Phylogenetic Trees/Animal Genes : TreeFamMAGEH1
HOVERGENQ9H213
HOGENOMQ9H213
Homologs : HomoloGeneMAGEH1
Homology/Alignments : Family Browser (UCSC)MAGEH1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEH1
dbVarMAGEH1
ClinVarMAGEH1
1000_GenomesMAGEH1 
Exome Variant ServerMAGEH1
ExAC (Exome Aggregation Consortium)MAGEH1 (select the gene name)
Genetic variants : HAPMAP28986
Genomic Variants (DGV)MAGEH1 [DGVbeta]
DECIPHERMAGEH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEH1 
Mutations
ICGC Data PortalMAGEH1 
TCGA Data PortalMAGEH1 
Broad Tumor PortalMAGEH1
OASIS PortalMAGEH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEH1
DgiDB (Drug Gene Interaction Database)MAGEH1
DoCM (Curated mutations)MAGEH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEH1 (select a term)
intoGenMAGEH1
Cancer3DMAGEH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300548   
Orphanet
MedgenMAGEH1
Genetic Testing Registry MAGEH1
NextProtQ9H213 [Medical]
TSGene28986
GENETestsMAGEH1
Target ValidationMAGEH1
Huge Navigator MAGEH1 [HugePedia]
snp3D : Map Gene to Disease28986
BioCentury BCIQMAGEH1
ClinGenMAGEH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28986
Chemical/Pharm GKB GenePA128394650
Clinical trialMAGEH1
Miscellaneous
canSAR (ICR)MAGEH1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEH1
EVEXMAGEH1
GoPubMedMAGEH1
iHOPMAGEH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:06:11 CEST 2017

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