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MAGIX (MAGI family member, X-linked)

Identity

Alias_symbol (synonym)PDZX
JM10
FLJ21687
Other alias
HGNC (Hugo) MAGIX
LocusID (NCBI) 79917
Atlas_Id 68762
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49162843 and ends at 49168156 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MAGIX (Xp11.23) / PLP2 (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGIX   30006
Cards
Entrez_Gene (NCBI)MAGIX  79917  MAGI family member, X-linked
AliasesJM10; PDZX
GeneCards (Weizmann)MAGIX
Ensembl hg19 (Hinxton)ENSG00000269313 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269313 [Gene_View]  chrX:49162843-49168156 [Contig_View]  MAGIX [Vega]
ICGC DataPortalENSG00000269313
TCGA cBioPortalMAGIX
AceView (NCBI)MAGIX
Genatlas (Paris)MAGIX
WikiGenes79917
SOURCE (Princeton)MAGIX
Genetics Home Reference (NIH)MAGIX
Genomic and cartography
GoldenPath hg38 (UCSC)MAGIX  -     chrX:49162843-49168156 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGIX  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblMAGIX - Xp11.23 [CytoView hg19]  MAGIX - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIMAGIX [Mapview hg19]  MAGIX [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI369342 AK025340 AK094251 AK096058 BC027995
RefSeq transcript (Entrez)NM_001099680 NM_001099681 NM_001099682 NM_024859
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGIX
Cluster EST : UnigeneHs.193170 [ NCBI ]
CGAP (NCI)Hs.193170
Alternative Splicing GalleryENSG00000269313
Gene ExpressionMAGIX [ NCBI-GEO ]   MAGIX [ EBI - ARRAY_EXPRESS ]   MAGIX [ SEEK ]   MAGIX [ MEM ]
Gene Expression Viewer (FireBrowse)MAGIX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79917
GTEX Portal (Tissue expression)MAGIX
Human Protein AtlasENSG00000269313-MAGIX [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6Y5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6Y5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6Y5
Splice isoforms : SwissVarQ9H6Y5
PhosPhoSitePlusQ9H6Y5
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)MAGIX    PDZ   
Domain families : Pfam (Sanger)PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)MAGIX
DMDM Disease mutations79917
Blocks (Seattle)MAGIX
PDB (SRS)2DJT   
PDB (PDBSum)2DJT   
PDB (IMB)2DJT   
PDB (RSDB)2DJT   
Structural Biology KnowledgeBase2DJT   
SCOP (Structural Classification of Proteins)2DJT   
CATH (Classification of proteins structures)2DJT   
SuperfamilyQ9H6Y5
Human Protein Atlas [tissue]ENSG00000269313-MAGIX [tissue]
Peptide AtlasQ9H6Y5
HPRD06538
IPIIPI00871845   IPI00016344   IPI00647032   IPI00855795   IPI00647630   IPI00641317   IPI00642783   IPI00639859   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6Y5
IntAct (EBI)Q9H6Y5
FunCoupENSG00000269313
BioGRIDMAGIX
STRING (EMBL)MAGIX
ZODIACMAGIX
Ontologies - Pathways
QuickGOQ9H6Y5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMAGIX
Atlas of Cancer Signalling NetworkMAGIX
Wikipedia pathwaysMAGIX
Orthology - Evolution
OrthoDB79917
GeneTree (enSembl)ENSG00000269313
Phylogenetic Trees/Animal Genes : TreeFamMAGIX
HOVERGENQ9H6Y5
HOGENOMQ9H6Y5
Homologs : HomoloGeneMAGIX
Homology/Alignments : Family Browser (UCSC)MAGIX
Gene fusions - Rearrangements
Tumor Fusion PortalMAGIX
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGIX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGIX
dbVarMAGIX
ClinVarMAGIX
1000_GenomesMAGIX 
Exome Variant ServerMAGIX
ExAC (Exome Aggregation Consortium)ENSG00000269313
GNOMAD BrowserENSG00000269313
Genetic variants : HAPMAP79917
Genomic Variants (DGV)MAGIX [DGVbeta]
DECIPHERMAGIX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGIX 
Mutations
ICGC Data PortalMAGIX 
TCGA Data PortalMAGIX 
Broad Tumor PortalMAGIX
OASIS PortalMAGIX [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMAGIX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAGIX
DgiDB (Drug Gene Interaction Database)MAGIX
DoCM (Curated mutations)MAGIX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGIX (select a term)
intoGenMAGIX
Cancer3DMAGIX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMAGIX
MedgenMAGIX
Genetic Testing Registry MAGIX
NextProtQ9H6Y5 [Medical]
TSGene79917
GENETestsMAGIX
Target ValidationMAGIX
Huge Navigator MAGIX [HugePedia]
snp3D : Map Gene to Disease79917
BioCentury BCIQMAGIX
ClinGenMAGIX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79917
Chemical/Pharm GKB GenePA162394882
Clinical trialMAGIX
Miscellaneous
canSAR (ICR)MAGIX (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGIX
EVEXMAGIX
GoPubMedMAGIX
iHOPMAGIX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:59:57 CET 2017

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