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MAGOH (mago homolog, exon junction complex core component)

Identity

Alias_namesmago-nashi (Drosophila) homolog, proliferation-associated
mago-nashi homolog, proliferation-associated (Drosophila)
Alias_symbol (synonym)MAGOHA
MAGOH1
Other alias
HGNC (Hugo) MAGOH
LocusID (NCBI) 4116
Atlas_Id 68763
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 53226892 and ends at 53238610 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAGOH (1p32.3) / ACADM (1p31.1)MAGOH (1p32.3) / SH3GL1 (19p13.3)MRPL48 (11q13.4) / MAGOH (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGOH   6815
Cards
Entrez_Gene (NCBI)MAGOH  4116  mago homolog, exon junction complex core component
AliasesMAGOH1; MAGOHA
GeneCards (Weizmann)MAGOH
Ensembl hg19 (Hinxton)ENSG00000162385 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162385 [Gene_View]  chr1:53226892-53238610 [Contig_View]  MAGOH [Vega]
ICGC DataPortalENSG00000162385
TCGA cBioPortalMAGOH
AceView (NCBI)MAGOH
Genatlas (Paris)MAGOH
WikiGenes4116
SOURCE (Princeton)MAGOH
Genetics Home Reference (NIH)MAGOH
Genomic and cartography
GoldenPath hg38 (UCSC)MAGOH  -     chr1:53226892-53238610 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGOH  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblMAGOH - 1p32.3 [CytoView hg19]  MAGOH - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIMAGOH [Mapview hg19]  MAGOH [Mapview hg38]
OMIM602603   
Gene and transcription
Genbank (Entrez)AF035940 AF067173 AF086246 AK297895 AK312113
RefSeq transcript (Entrez)NM_002370
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGOH
Cluster EST : UnigeneHs.421576 [ NCBI ]
CGAP (NCI)Hs.421576
Alternative Splicing GalleryENSG00000162385
Gene ExpressionMAGOH [ NCBI-GEO ]   MAGOH [ EBI - ARRAY_EXPRESS ]   MAGOH [ SEEK ]   MAGOH [ MEM ]
Gene Expression Viewer (FireBrowse)MAGOH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4116
GTEX Portal (Tissue expression)MAGOH
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61326   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61326  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61326
Splice isoforms : SwissVarP61326
PhosPhoSitePlusP61326
Domains : Interpro (EBI)Mago_nashi   
Domain families : Pfam (Sanger)Mago_nashi (PF02792)   
Domain families : Pfam (NCBI)pfam02792   
Conserved Domain (NCBI)MAGOH
DMDM Disease mutations4116
Blocks (Seattle)MAGOH
PDB (SRS)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
PDB (PDBSum)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
PDB (IMB)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
PDB (RSDB)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
Structural Biology KnowledgeBase1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
SCOP (Structural Classification of Proteins)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
CATH (Classification of proteins structures)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
SuperfamilyP61326
Human Protein AtlasENSG00000162385
Peptide AtlasP61326
HPRD04005
IPIIPI00219306   IPI00513955   
Protein Interaction databases
DIP (DOE-UCLA)P61326
IntAct (EBI)P61326
FunCoupENSG00000162385
BioGRIDMAGOH
STRING (EMBL)MAGOH
ZODIACMAGOH
Ontologies - Pathways
QuickGOP61326
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  regulation of alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  termination of RNA polymerase II transcription  RNA export from nucleus  mRNA export from nucleus  regulation of translation  nuclear speck  mRNA 3'-end processing  exon-exon junction complex  catalytic step 2 spliceosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  regulation of alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  termination of RNA polymerase II transcription  RNA export from nucleus  mRNA export from nucleus  regulation of translation  nuclear speck  mRNA 3'-end processing  exon-exon junction complex  catalytic step 2 spliceosome  
Pathways : KEGGRNA transport    mRNA surveillance pathway    Spliceosome   
NDEx NetworkMAGOH
Atlas of Cancer Signalling NetworkMAGOH
Wikipedia pathwaysMAGOH
Orthology - Evolution
OrthoDB4116
GeneTree (enSembl)ENSG00000162385
Phylogenetic Trees/Animal Genes : TreeFamMAGOH
HOVERGENP61326
HOGENOMP61326
Homologs : HomoloGeneMAGOH
Homology/Alignments : Family Browser (UCSC)MAGOH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGOH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGOH
dbVarMAGOH
ClinVarMAGOH
1000_GenomesMAGOH 
Exome Variant ServerMAGOH
ExAC (Exome Aggregation Consortium)MAGOH (select the gene name)
Genetic variants : HAPMAP4116
Genomic Variants (DGV)MAGOH [DGVbeta]
DECIPHERMAGOH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGOH 
Mutations
ICGC Data PortalMAGOH 
TCGA Data PortalMAGOH 
Broad Tumor PortalMAGOH
OASIS PortalMAGOH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGOH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGOH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAGOH
DgiDB (Drug Gene Interaction Database)MAGOH
DoCM (Curated mutations)MAGOH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGOH (select a term)
intoGenMAGOH
Cancer3DMAGOH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602603   
Orphanet
MedgenMAGOH
Genetic Testing Registry MAGOH
NextProtP61326 [Medical]
TSGene4116
GENETestsMAGOH
Target ValidationMAGOH
Huge Navigator MAGOH [HugePedia]
snp3D : Map Gene to Disease4116
BioCentury BCIQMAGOH
ClinGenMAGOH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4116
Chemical/Pharm GKB GenePA30563
Clinical trialMAGOH
Miscellaneous
canSAR (ICR)MAGOH (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGOH
EVEXMAGOH
GoPubMedMAGOH
iHOPMAGOH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:25:23 CEST 2017

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