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MAGOHB (mago homolog B, exon junction complex core component)

Identity

Alias_namesmago-nashi homolog B (Drosophila)
Alias_symbol (synonym)FLJ10292
MGN2
Other aliasmago
magoh
HGNC (Hugo) MAGOHB
LocusID (NCBI) 55110
Atlas_Id 68765
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 10604190 and ends at 10612978 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAGOHB (12p13.2) / TAGLN2 (1q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGOHB   25504
Cards
Entrez_Gene (NCBI)MAGOHB  55110  mago homolog B, exon junction complex core component
AliasesMGN2; mago; magoh
GeneCards (Weizmann)MAGOHB
Ensembl hg19 (Hinxton)ENSG00000111196 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111196 [Gene_View]  chr12:10604190-10612978 [Contig_View]  MAGOHB [Vega]
ICGC DataPortalENSG00000111196
TCGA cBioPortalMAGOHB
AceView (NCBI)MAGOHB
Genatlas (Paris)MAGOHB
WikiGenes55110
SOURCE (Princeton)MAGOHB
Genetics Home Reference (NIH)MAGOHB
Genomic and cartography
GoldenPath hg38 (UCSC)MAGOHB  -     chr12:10604190-10612978 -  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGOHB  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblMAGOHB - 12p13.2 [CytoView hg19]  MAGOHB - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBIMAGOHB [Mapview hg19]  MAGOHB [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF165518 AK001154 AK022720 AK096106 BC000928
RefSeq transcript (Entrez)NM_001300739 NM_001319985 NM_018048
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGOHB
Cluster EST : UnigeneHs.104650 [ NCBI ]
CGAP (NCI)Hs.104650
Alternative Splicing GalleryENSG00000111196
Gene ExpressionMAGOHB [ NCBI-GEO ]   MAGOHB [ EBI - ARRAY_EXPRESS ]   MAGOHB [ SEEK ]   MAGOHB [ MEM ]
Gene Expression Viewer (FireBrowse)MAGOHB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55110
GTEX Portal (Tissue expression)MAGOHB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A72
Splice isoforms : SwissVarQ96A72
PhosPhoSitePlusQ96A72
Domains : Interpro (EBI)Mago_nashi   
Domain families : Pfam (Sanger)Mago_nashi (PF02792)   
Domain families : Pfam (NCBI)pfam02792   
Conserved Domain (NCBI)MAGOHB
DMDM Disease mutations55110
Blocks (Seattle)MAGOHB
SuperfamilyQ96A72
Human Protein AtlasENSG00000111196
Peptide AtlasQ96A72
HPRD08544
IPIIPI00059292   IPI00745029   IPI00797788   IPI01014626   IPI01013857   IPI01014243   
Protein Interaction databases
DIP (DOE-UCLA)Q96A72
IntAct (EBI)Q96A72
FunCoupENSG00000111196
BioGRIDMAGOHB
STRING (EMBL)MAGOHB
ZODIACMAGOHB
Ontologies - Pathways
QuickGOQ96A72
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  termination of RNA polymerase II transcription  RNA export from nucleus  mRNA export from nucleus  RNA splicing  mRNA 3'-end processing  exon-exon junction complex  neuronal cell body  catalytic step 2 spliceosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  termination of RNA polymerase II transcription  RNA export from nucleus  mRNA export from nucleus  RNA splicing  mRNA 3'-end processing  exon-exon junction complex  neuronal cell body  catalytic step 2 spliceosome  
Pathways : KEGGRNA transport    mRNA surveillance pathway    Spliceosome   
NDEx NetworkMAGOHB
Atlas of Cancer Signalling NetworkMAGOHB
Wikipedia pathwaysMAGOHB
Orthology - Evolution
OrthoDB55110
GeneTree (enSembl)ENSG00000111196
Phylogenetic Trees/Animal Genes : TreeFamMAGOHB
HOVERGENQ96A72
HOGENOMQ96A72
Homologs : HomoloGeneMAGOHB
Homology/Alignments : Family Browser (UCSC)MAGOHB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGOHB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGOHB
dbVarMAGOHB
ClinVarMAGOHB
1000_GenomesMAGOHB 
Exome Variant ServerMAGOHB
ExAC (Exome Aggregation Consortium)MAGOHB (select the gene name)
Genetic variants : HAPMAP55110
Genomic Variants (DGV)MAGOHB [DGVbeta]
DECIPHERMAGOHB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGOHB 
Mutations
ICGC Data PortalMAGOHB 
TCGA Data PortalMAGOHB 
Broad Tumor PortalMAGOHB
OASIS PortalMAGOHB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGOHB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGOHB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAGOHB
DgiDB (Drug Gene Interaction Database)MAGOHB
DoCM (Curated mutations)MAGOHB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGOHB (select a term)
intoGenMAGOHB
Cancer3DMAGOHB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMAGOHB
Genetic Testing Registry MAGOHB
NextProtQ96A72 [Medical]
TSGene55110
GENETestsMAGOHB
Target ValidationMAGOHB
Huge Navigator MAGOHB [HugePedia]
snp3D : Map Gene to Disease55110
BioCentury BCIQMAGOHB
ClinGenMAGOHB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55110
Chemical/Pharm GKB GenePA162394899
Clinical trialMAGOHB
Miscellaneous
canSAR (ICR)MAGOHB (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGOHB
EVEXMAGOHB
GoPubMedMAGOHB
iHOPMAGOHB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:23 CEST 2017

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