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MAGT1 (magnesium transporter 1)

Identity

Alias_symbol (synonym)DKFZp564K142
IAP
OST3B
MRX95
Other aliasPRO0756
XMEN
bA217H1.1
HGNC (Hugo) MAGT1
LocusID (NCBI) 84061
Atlas_Id 56622
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 77081862 and ends at 77151065 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LOC729421 () / MAGT1 (Xq21.1)MAGT1 (Xq21.1) / UGDH (4p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGT1   28880
LRG (Locus Reference Genomic)LRG_353
Cards
Entrez_Gene (NCBI)MAGT1  84061  magnesium transporter 1
AliasesIAP; MRX95; OST3B; PRO0756; 
XMEN; bA217H1.1
GeneCards (Weizmann)MAGT1
Ensembl hg19 (Hinxton)ENSG00000102158 [Gene_View]  chrX:77081862-77151065 [Contig_View]  MAGT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000102158 [Gene_View]  chrX:77081862-77151065 [Contig_View]  MAGT1 [Vega]
ICGC DataPortalENSG00000102158
TCGA cBioPortalMAGT1
AceView (NCBI)MAGT1
Genatlas (Paris)MAGT1
WikiGenes84061
SOURCE (Princeton)MAGT1
Genetics Home Reference (NIH)MAGT1
Genomic and cartography
GoldenPath hg19 (UCSC)MAGT1  -     chrX:77081862-77151065 -  Xq21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAGT1  -     Xq21.1   [Description]    (hg38-Dec_2013)
EnsemblMAGT1 - Xq21.1 [CytoView hg19]  MAGT1 - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBIMAGT1 [Mapview hg19]  MAGT1 [Mapview hg38]
OMIM300715   300853   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_032121
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGT1
Cluster EST : UnigeneHs.323562 [ NCBI ]
CGAP (NCI)Hs.323562
Alternative Splicing GalleryENSG00000102158
Gene ExpressionMAGT1 [ NCBI-GEO ]   MAGT1 [ EBI - ARRAY_EXPRESS ]   MAGT1 [ SEEK ]   MAGT1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84061
GTEX Portal (Tissue expression)MAGT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0U3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0U3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0U3
Splice isoforms : SwissVarQ9H0U3
PhosPhoSitePlusQ9H0U3
Domains : Interpro (EBI)Mg_transporter-1    OligosaccharylTrfase_OST3/OST6    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)OST3_OST6 (PF04756)   
Domain families : Pfam (NCBI)pfam04756   
Conserved Domain (NCBI)MAGT1
DMDM Disease mutations84061
Blocks (Seattle)MAGT1
SuperfamilyQ9H0U3
Human Protein AtlasENSG00000102158
Peptide AtlasQ9H0U3
HPRD06487
IPIIPI01015152   IPI00301202   IPI00644013   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0U3
IntAct (EBI)Q9H0U3
FunCoupENSG00000102158
BioGRIDMAGT1
STRING (EMBL)MAGT1
ZODIACMAGT1
Ontologies - Pathways
QuickGOQ9H0U3
Ontology : AmiGOdolichyl-diphosphooligosaccharide-protein glycotransferase activity  plasma membrane  integral component of plasma membrane  protein N-linked glycosylation  oligosaccharyltransferase complex  magnesium ion transmembrane transporter activity  magnesium ion transmembrane transporter activity  magnesium ion transport  membrane  protein N-linked glycosylation via asparagine  protein N-linked glycosylation via asparagine  cognition  transmembrane transport  magnesium ion transmembrane transport  
Ontology : EGO-EBIdolichyl-diphosphooligosaccharide-protein glycotransferase activity  plasma membrane  integral component of plasma membrane  protein N-linked glycosylation  oligosaccharyltransferase complex  magnesium ion transmembrane transporter activity  magnesium ion transmembrane transporter activity  magnesium ion transport  membrane  protein N-linked glycosylation via asparagine  protein N-linked glycosylation via asparagine  cognition  transmembrane transport  magnesium ion transmembrane transport  
NDEx NetworkMAGT1
Atlas of Cancer Signalling NetworkMAGT1
Wikipedia pathwaysMAGT1
Orthology - Evolution
OrthoDB84061
GeneTree (enSembl)ENSG00000102158
Phylogenetic Trees/Animal Genes : TreeFamMAGT1
HOVERGENQ9H0U3
HOGENOMQ9H0U3
Homologs : HomoloGeneMAGT1
Homology/Alignments : Family Browser (UCSC)MAGT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGT1
dbVarMAGT1
ClinVarMAGT1
1000_GenomesMAGT1 
Exome Variant ServerMAGT1
ExAC (Exome Aggregation Consortium)MAGT1 (select the gene name)
Genetic variants : HAPMAP84061
Genomic Variants (DGV)MAGT1 [DGVbeta]
DECIPHER (Syndromes)X:77081862-77151065  ENSG00000102158
CONAN: Copy Number AnalysisMAGT1 
Mutations
ICGC Data PortalMAGT1 
TCGA Data PortalMAGT1 
Broad Tumor PortalMAGT1
OASIS PortalMAGT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch MAGT1
DgiDB (Drug Gene Interaction Database)MAGT1
DoCM (Curated mutations)MAGT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGT1 (select a term)
intoGenMAGT1
Cancer3DMAGT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300715    300853   
Orphanet
MedgenMAGT1
Genetic Testing Registry MAGT1
NextProtQ9H0U3 [Medical]
TSGene84061
GENETestsMAGT1
Huge Navigator MAGT1 [HugePedia]
snp3D : Map Gene to Disease84061
BioCentury BCIQMAGT1
ClinGenMAGT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84061
Chemical/Pharm GKB GenePA162394900
Clinical trialMAGT1
Miscellaneous
canSAR (ICR)MAGT1 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGT1
EVEXMAGT1
GoPubMedMAGT1
iHOPMAGT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:14:17 CET 2017

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