Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MAK16 (MAK16 homolog)

Identity

Alias_namesRBM13
RNA binding motif protein 13
MAK16 homolog (S. cerevisiae)
Alias_symbol (synonym)MAK16L
Other alias
HGNC (Hugo) MAK16
LocusID (NCBI) 84549
Atlas_Id 68767
Location 8p12  [Link to chromosome band 8p12]
Location_base_pair Starts at 33485167 and ends at 33501260 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAK16 (8p12) / ANGPT2 (8p23.1)RPS18 (6p21.32) / MAK16 (8p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAK16   13703
Cards
Entrez_Gene (NCBI)MAK16  84549  MAK16 homolog
AliasesMAK16L; RBM13
GeneCards (Weizmann)MAK16
Ensembl hg19 (Hinxton)ENSG00000198042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198042 [Gene_View]  chr8:33485167-33501260 [Contig_View]  MAK16 [Vega]
ICGC DataPortalENSG00000198042
TCGA cBioPortalMAK16
AceView (NCBI)MAK16
Genatlas (Paris)MAK16
WikiGenes84549
SOURCE (Princeton)MAK16
Genetics Home Reference (NIH)MAK16
Genomic and cartography
GoldenPath hg38 (UCSC)MAK16  -     chr8:33485167-33501260 +  8p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAK16  -     8p12   [Description]    (hg19-Feb_2009)
EnsemblMAK16 - 8p12 [CytoView hg19]  MAK16 - 8p12 [CytoView hg38]
Mapping of homologs : NCBIMAK16 [Mapview hg19]  MAK16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF251062 AK027469 AK225476 AK314491 AL049422
RefSeq transcript (Entrez)NM_032509
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAK16
Cluster EST : UnigeneHs.583805 [ NCBI ]
CGAP (NCI)Hs.583805
Alternative Splicing GalleryENSG00000198042
Gene ExpressionMAK16 [ NCBI-GEO ]   MAK16 [ EBI - ARRAY_EXPRESS ]   MAK16 [ SEEK ]   MAK16 [ MEM ]
Gene Expression Viewer (FireBrowse)MAK16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84549
GTEX Portal (Tissue expression)MAK16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXY0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXY0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXY0
Splice isoforms : SwissVarQ9BXY0
PhosPhoSitePlusQ9BXY0
Domains : Interpro (EBI)L28e/Mak16    Mak16   
Domain families : Pfam (Sanger)Mak16 (PF04874)    Ribosomal_L28e (PF01778)   
Domain families : Pfam (NCBI)pfam04874    pfam01778   
Conserved Domain (NCBI)MAK16
DMDM Disease mutations84549
Blocks (Seattle)MAK16
SuperfamilyQ9BXY0
Human Protein AtlasENSG00000198042
Peptide AtlasQ9BXY0
HPRD15223
IPIIPI00332428   IPI00816116   IPI00981806   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXY0
IntAct (EBI)Q9BXY0
FunCoupENSG00000198042
BioGRIDMAK16
STRING (EMBL)MAK16
ZODIACMAK16
Ontologies - Pathways
QuickGOQ9BXY0
Ontology : AmiGOmaturation of 5.8S rRNA  maturation of LSU-rRNA  RNA binding  nucleolus  nucleolus  preribosome, large subunit precursor  intracellular membrane-bounded organelle  
Ontology : EGO-EBImaturation of 5.8S rRNA  maturation of LSU-rRNA  RNA binding  nucleolus  nucleolus  preribosome, large subunit precursor  intracellular membrane-bounded organelle  
NDEx NetworkMAK16
Atlas of Cancer Signalling NetworkMAK16
Wikipedia pathwaysMAK16
Orthology - Evolution
OrthoDB84549
GeneTree (enSembl)ENSG00000198042
Phylogenetic Trees/Animal Genes : TreeFamMAK16
HOVERGENQ9BXY0
HOGENOMQ9BXY0
Homologs : HomoloGeneMAK16
Homology/Alignments : Family Browser (UCSC)MAK16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAK16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAK16
dbVarMAK16
ClinVarMAK16
1000_GenomesMAK16 
Exome Variant ServerMAK16
ExAC (Exome Aggregation Consortium)MAK16 (select the gene name)
Genetic variants : HAPMAP84549
Genomic Variants (DGV)MAK16 [DGVbeta]
DECIPHERMAK16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAK16 
Mutations
ICGC Data PortalMAK16 
TCGA Data PortalMAK16 
Broad Tumor PortalMAK16
OASIS PortalMAK16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAK16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAK16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAK16
DgiDB (Drug Gene Interaction Database)MAK16
DoCM (Curated mutations)MAK16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAK16 (select a term)
intoGenMAK16
Cancer3DMAK16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMAK16
Genetic Testing Registry MAK16
NextProtQ9BXY0 [Medical]
TSGene84549
GENETestsMAK16
Target ValidationMAK16
Huge Navigator MAK16 [HugePedia]
snp3D : Map Gene to Disease84549
BioCentury BCIQMAK16
ClinGenMAK16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84549
Chemical/Pharm GKB GenePA162394925
Clinical trialMAK16
Miscellaneous
canSAR (ICR)MAK16 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAK16
EVEXMAK16
GoPubMedMAK16
iHOPMAK16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:26:51 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.