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MALL (mal, T cell differentiation protein like)

Identity

Alias_symbol (synonym)BENE
Other alias
HGNC (Hugo) MALL
LocusID (NCBI) 7851
Atlas_Id 53949
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 110083870 and ends at 110116566 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BMP1 (8p21.3) / MALL (2q13)HLA-E (6p21.33) / MALL (2q13)NPHP1 (2q13) / MALL (2q13)
PAK4 (19q13.2) / MALL (2q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MALL   6818
Cards
Entrez_Gene (NCBI)MALL  7851  mal, T cell differentiation protein like
AliasesBENE
GeneCards (Weizmann)MALL
Ensembl hg19 (Hinxton)ENSG00000144063 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144063 [Gene_View]  ENSG00000144063 [Sequence]  chr2:110083870-110116566 [Contig_View]  MALL [Vega]
ICGC DataPortalENSG00000144063
TCGA cBioPortalMALL
AceView (NCBI)MALL
Genatlas (Paris)MALL
WikiGenes7851
SOURCE (Princeton)MALL
Genetics Home Reference (NIH)MALL
Genomic and cartography
GoldenPath hg38 (UCSC)MALL  -     chr2:110083870-110116566 -  2q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MALL  -     2q13   [Description]    (hg19-Feb_2009)
EnsemblMALL - 2q13 [CytoView hg19]  MALL - 2q13 [CytoView hg38]
Mapping of homologs : NCBIMALL [Mapview hg19]  MALL [Mapview hg38]
OMIM602022   
Gene and transcription
Genbank (Entrez)AI911238 AK056616 AK125647 AK311353 BC003179
RefSeq transcript (Entrez)NM_005434
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MALL
Cluster EST : UnigeneHs.185055 [ NCBI ]
CGAP (NCI)Hs.185055
Alternative Splicing GalleryENSG00000144063
Gene ExpressionMALL [ NCBI-GEO ]   MALL [ EBI - ARRAY_EXPRESS ]   MALL [ SEEK ]   MALL [ MEM ]
Gene Expression Viewer (FireBrowse)MALL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7851
GTEX Portal (Tissue expression)MALL
Human Protein AtlasENSG00000144063-MALL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13021   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13021  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13021
Splice isoforms : SwissVarQ13021
PhosPhoSitePlusQ13021
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)MAL    Marvel   
Domain families : Pfam (Sanger)MARVEL (PF01284)   
Domain families : Pfam (NCBI)pfam01284   
Conserved Domain (NCBI)MALL
DMDM Disease mutations7851
Blocks (Seattle)MALL
SuperfamilyQ13021
Human Protein Atlas [tissue]ENSG00000144063-MALL [tissue]
Peptide AtlasQ13021
HPRD15997
IPIIPI00011439   IPI00925096   IPI00927026   
Protein Interaction databases
DIP (DOE-UCLA)Q13021
IntAct (EBI)Q13021
FunCoupENSG00000144063
BioGRIDMALL
STRING (EMBL)MALL
ZODIACMALL
Ontologies - Pathways
QuickGOQ13021
Ontology : AmiGOGolgi membrane  protein binding  plasma membrane  integral component of membrane  structural constituent of myelin sheath  clathrin-coated vesicle  cytoplasmic vesicle  myelination  cholesterol homeostasis  membrane raft  
Ontology : EGO-EBIGolgi membrane  protein binding  plasma membrane  integral component of membrane  structural constituent of myelin sheath  clathrin-coated vesicle  cytoplasmic vesicle  myelination  cholesterol homeostasis  membrane raft  
NDEx NetworkMALL
Atlas of Cancer Signalling NetworkMALL
Wikipedia pathwaysMALL
Orthology - Evolution
OrthoDB7851
GeneTree (enSembl)ENSG00000144063
Phylogenetic Trees/Animal Genes : TreeFamMALL
HOVERGENQ13021
HOGENOMQ13021
Homologs : HomoloGeneMALL
Homology/Alignments : Family Browser (UCSC)MALL
Gene fusions - Rearrangements
Fusion : QuiverMALL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMALL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MALL
dbVarMALL
ClinVarMALL
1000_GenomesMALL 
Exome Variant ServerMALL
ExAC (Exome Aggregation Consortium)ENSG00000144063
GNOMAD BrowserENSG00000144063
Varsome BrowserMALL
Genetic variants : HAPMAP7851
Genomic Variants (DGV)MALL [DGVbeta]
DECIPHERMALL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMALL 
Mutations
ICGC Data PortalMALL 
TCGA Data PortalMALL 
Broad Tumor PortalMALL
OASIS PortalMALL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMALL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMALL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MALL
DgiDB (Drug Gene Interaction Database)MALL
DoCM (Curated mutations)MALL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MALL (select a term)
intoGenMALL
Cancer3DMALL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602022   
Orphanet
DisGeNETMALL
MedgenMALL
Genetic Testing Registry MALL
NextProtQ13021 [Medical]
TSGene7851
GENETestsMALL
Target ValidationMALL
Huge Navigator MALL [HugePedia]
snp3D : Map Gene to Disease7851
BioCentury BCIQMALL
ClinGenMALL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7851
Chemical/Pharm GKB GenePA30567
Clinical trialMALL
Miscellaneous
canSAR (ICR)MALL (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMALL
EVEXMALL
GoPubMedMALL
iHOPMALL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:18:37 CET 2018

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