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MALRD1 (MAM and LDL receptor class A domain containing 1)

Identity

Alias_namesC10orf112
chromosome 10 open reading frame 112
Alias_symbol (synonym)bA265G8.2
Diet1
Other aliasDIET1
HGNC (Hugo) MALRD1
LocusID (NCBI) 340895
Atlas_Id 68768
Location 10p12.31  [Link to chromosome band 10p12]
Location_base_pair Starts at 19337700 and ends at 20023407 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MALRD1 (10p12.31) / GPR158 (10p12.1)MSRB2 (10p12.2) / MALRD1 (10p12.31)PLXDC2 (10p12.31) / MALRD1 (10p12.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MALRD1   24331
Cards
Entrez_Gene (NCBI)MALRD1  340895  MAM and LDL receptor class A domain containing 1
AliasesC10orf112; DIET1; bA265G8.2
GeneCards (Weizmann)MALRD1
Ensembl hg19 (Hinxton)ENSG00000204740 [Gene_View]  chr10:19337700-20023407 [Contig_View]  MALRD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204740 [Gene_View]  chr10:19337700-20023407 [Contig_View]  MALRD1 [Vega]
ICGC DataPortalENSG00000204740
TCGA cBioPortalMALRD1
AceView (NCBI)MALRD1
Genatlas (Paris)MALRD1
WikiGenes340895
SOURCE (Princeton)MALRD1
Genetics Home Reference (NIH)MALRD1
Genomic and cartography
GoldenPath hg19 (UCSC)MALRD1  -     chr10:19337700-20023407 +  10p12.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MALRD1  -     10p12.31   [Description]    (hg38-Dec_2013)
EnsemblMALRD1 - 10p12.31 [CytoView hg19]  MALRD1 - 10p12.31 [CytoView hg38]
Mapping of homologs : NCBIMALRD1 [Mapview hg19]  MALRD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK297683 BG192521 DB087413 KC843478
RefSeq transcript (Entrez)NM_001142308
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_008705 NW_004929370
Consensus coding sequences : CCDS (NCBI)MALRD1
Cluster EST : UnigeneHs.646734 [ NCBI ]
CGAP (NCI)Hs.646734
Alternative Splicing GalleryENSG00000204740
Gene ExpressionMALRD1 [ NCBI-GEO ]   MALRD1 [ EBI - ARRAY_EXPRESS ]   MALRD1 [ SEEK ]   MALRD1 [ MEM ]
Gene Expression Viewer (FireBrowse)MALRD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340895
GTEX Portal (Tissue expression)MALRD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VYJ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VYJ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VYJ5
Splice isoforms : SwissVarQ5VYJ5
PhosPhoSitePlusQ5VYJ5
Domaine pattern : Prosite (Expaxy)LDLRA_1 (PS01209)    LDLRA_2 (PS50068)    MAM_2 (PS50060)   
Domains : Interpro (EBI)ConA-like_dom    LDLR_class-A_CS    LDrepeatLR_classA_rpt    MAM_dom   
Domain families : Pfam (Sanger)Ldl_recept_a (PF00057)    MAM (PF00629)   
Domain families : Pfam (NCBI)pfam00057    pfam00629   
Domain families : Smart (EMBL)LDLa (SM00192)  MAM (SM00137)  
Conserved Domain (NCBI)MALRD1
DMDM Disease mutations340895
Blocks (Seattle)MALRD1
SuperfamilyQ5VYJ5
Human Protein AtlasENSG00000204740
Peptide AtlasQ5VYJ5
IPIIPI00888868   IPI00888775   IPI00927632   IPI00925304   
Protein Interaction databases
DIP (DOE-UCLA)Q5VYJ5
IntAct (EBI)Q5VYJ5
FunCoupENSG00000204740
BioGRIDMALRD1
STRING (EMBL)MALRD1
ZODIACMALRD1
Ontologies - Pathways
QuickGOQ5VYJ5
Ontology : AmiGOcytoplasm  integral component of membrane  cholesterol homeostasis  negative regulation of bile acid biosynthetic process  
Ontology : EGO-EBIcytoplasm  integral component of membrane  cholesterol homeostasis  negative regulation of bile acid biosynthetic process  
NDEx NetworkMALRD1
Atlas of Cancer Signalling NetworkMALRD1
Wikipedia pathwaysMALRD1
Orthology - Evolution
OrthoDB340895
GeneTree (enSembl)ENSG00000204740
Phylogenetic Trees/Animal Genes : TreeFamMALRD1
HOVERGENQ5VYJ5
HOGENOMQ5VYJ5
Homologs : HomoloGeneMALRD1
Homology/Alignments : Family Browser (UCSC)MALRD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMALRD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MALRD1
dbVarMALRD1
ClinVarMALRD1
1000_GenomesMALRD1 
Exome Variant ServerMALRD1
ExAC (Exome Aggregation Consortium)MALRD1 (select the gene name)
Genetic variants : HAPMAP340895
Genomic Variants (DGV)MALRD1 [DGVbeta]
DECIPHER (Syndromes)10:19337700-20023407  ENSG00000204740
CONAN: Copy Number AnalysisMALRD1 
Mutations
ICGC Data PortalMALRD1 
TCGA Data PortalMALRD1 
Broad Tumor PortalMALRD1
OASIS PortalMALRD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMALRD1
BioMutasearch MALRD1
DgiDB (Drug Gene Interaction Database)MALRD1
DoCM (Curated mutations)MALRD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MALRD1 (select a term)
intoGenMALRD1
Cancer3DMALRD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMALRD1
Genetic Testing Registry MALRD1
NextProtQ5VYJ5 [Medical]
TSGene340895
GENETestsMALRD1
Huge Navigator MALRD1 [HugePedia]
snp3D : Map Gene to Disease340895
BioCentury BCIQMALRD1
ClinGenMALRD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340895
Chemical/Pharm GKB GenePA134958320
Clinical trialMALRD1
Miscellaneous
canSAR (ICR)MALRD1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMALRD1
EVEXMALRD1
GoPubMedMALRD1
iHOPMALRD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:35 CET 2017

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