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MALRD1 (MAM and LDL receptor class A domain containing 1)

Identity

Alias (NCBI)C10orf112
DIET1
bA265G8.2
HGNC (Hugo) MALRD1
HGNC Alias symbbA265G8.2
Diet1
HGNC Previous nameC10orf112
HGNC Previous namechromosome 10 open reading frame 112
LocusID (NCBI) 340895
Atlas_Id 68768
Location 10p12.31  [Link to chromosome band 10p12]
Location_base_pair Starts at 19048801 and ends at 19734478 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MALRD1 (10p12.31) / GPR158 (10p12.1)MSRB2 (10p12.2) / MALRD1 (10p12.31)PLXDC2 (10p12.31) / MALRD1 (10p12.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MALRD1   24331
Cards
Entrez_Gene (NCBI)MALRD1    MAM and LDL receptor class A domain containing 1
AliasesC10orf112; DIET1; bA265G8.2
GeneCards (Weizmann)MALRD1
Ensembl hg19 (Hinxton)ENSG00000204740 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204740 [Gene_View]  ENSG00000204740 [Sequence]  chr10:19048801-19734478 [Contig_View]  MALRD1 [Vega]
ICGC DataPortalENSG00000204740
TCGA cBioPortalMALRD1
AceView (NCBI)MALRD1
Genatlas (Paris)MALRD1
SOURCE (Princeton)MALRD1
Genetics Home Reference (NIH)MALRD1
Genomic and cartography
GoldenPath hg38 (UCSC)MALRD1  -     chr10:19048801-19734478 +  10p12.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MALRD1  -     10p12.31   [Description]    (hg19-Feb_2009)
GoldenPathMALRD1 - 10p12.31 [CytoView hg19]  MALRD1 - 10p12.31 [CytoView hg38]
ImmunoBaseENSG00000204740
Genome Data Viewer NCBIMALRD1 [Mapview hg19]  
OMIM617715   
Gene and transcription
Genbank (Entrez)AK297683 BG192521 DB087413 KC843478
RefSeq transcript (Entrez)NM_001142308
Consensus coding sequences : CCDS (NCBI)MALRD1
Gene ExpressionMALRD1 [ NCBI-GEO ]   MALRD1 [ EBI - ARRAY_EXPRESS ]   MALRD1 [ SEEK ]   MALRD1 [ MEM ]
Gene Expression Viewer (FireBrowse)MALRD1 [ Firebrowse - Broad ]
GenevisibleExpression of MALRD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340895
GTEX Portal (Tissue expression)MALRD1
Human Protein AtlasENSG00000204740-MALRD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VYJ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VYJ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VYJ5
PhosPhoSitePlusQ5VYJ5
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    LDLRA_1 (PS01209)    LDLRA_2 (PS50068)    MAM_2 (PS50060)   
Domains : Interpro (EBI)ConA-like_dom_sf    EGF-like_dom    LDL_receptor-like_sf    LDLR_class-A_CS    LDrepeatLR_classA_rpt    MAM_dom   
Domain families : Pfam (Sanger)EGF (PF00008)    Ldl_recept_a (PF00057)    MAM (PF00629)   
Domain families : Pfam (NCBI)pfam00008    pfam00057    pfam00629   
Domain families : Smart (EMBL)EGF (SM00181)  LDLa (SM00192)  MAM (SM00137)  
Conserved Domain (NCBI)MALRD1
SuperfamilyQ5VYJ5
AlphaFold pdb e-kbQ5VYJ5   
Human Protein Atlas [tissue]ENSG00000204740-MALRD1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q5VYJ5
IntAct (EBI)Q5VYJ5
BioGRIDMALRD1
STRING (EMBL)MALRD1
ZODIACMALRD1
Ontologies - Pathways
QuickGOQ5VYJ5
Ontology : AmiGOGolgi apparatus  integral component of membrane  cytoplasmic vesicle membrane  cholesterol homeostasis  negative regulation of bile acid biosynthetic process  
Ontology : EGO-EBIGolgi apparatus  integral component of membrane  cytoplasmic vesicle membrane  cholesterol homeostasis  negative regulation of bile acid biosynthetic process  
NDEx NetworkMALRD1
Atlas of Cancer Signalling NetworkMALRD1
Wikipedia pathwaysMALRD1
Orthology - Evolution
OrthoDB340895
GeneTree (enSembl)ENSG00000204740
Phylogenetic Trees/Animal Genes : TreeFamMALRD1
Homologs : HomoloGeneMALRD1
Homology/Alignments : Family Browser (UCSC)MALRD1
Gene fusions - Rearrangements
Fusion : QuiverMALRD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMALRD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MALRD1
dbVarMALRD1
ClinVarMALRD1
MonarchMALRD1
1000_GenomesMALRD1 
Exome Variant ServerMALRD1
GNOMAD BrowserENSG00000204740
Varsome BrowserMALRD1
ACMGMALRD1 variants
VarityQ5VYJ5
Genomic Variants (DGV)MALRD1 [DGVbeta]
DECIPHERMALRD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMALRD1 
Mutations
ICGC Data PortalMALRD1 
TCGA Data PortalMALRD1 
Broad Tumor PortalMALRD1
OASIS PortalMALRD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMALRD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMALRD1
Mutations and Diseases : HGMDMALRD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMALRD1
DgiDB (Drug Gene Interaction Database)MALRD1
DoCM (Curated mutations)MALRD1
CIViC (Clinical Interpretations of Variants in Cancer)MALRD1
Cancer3DMALRD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617715   
Orphanet
DisGeNETMALRD1
MedgenMALRD1
Genetic Testing Registry MALRD1
NextProtQ5VYJ5 [Medical]
GENETestsMALRD1
Target ValidationMALRD1
Huge Navigator MALRD1 [HugePedia]
ClinGenMALRD1
Clinical trials, drugs, therapy
MyCancerGenomeMALRD1
Protein Interactions : CTDMALRD1
Pharm GKB GenePA134958320
PharosQ5VYJ5
Clinical trialMALRD1
Miscellaneous
canSAR (ICR)MALRD1
HarmonizomeMALRD1
DataMed IndexMALRD1
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMALRD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:06:46 CEST 2021

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