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MALSU1 (mitochondrial assembly of ribosomal large subunit 1)

Identity

Alias_namesC7orf30
chromosome 7 open reading frame 30
Alias_symbol (synonym)mtRsfA
Other alias
HGNC (Hugo) MALSU1
LocusID (NCBI) 115416
Atlas_Id 68769
Location 7p15.3  [Link to chromosome band 7p15]
Location_base_pair Starts at 23299321 and ends at 23309561 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MALSU1 (7p15.3) / MALSU1 (7p15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MALSU1   21721
Cards
Entrez_Gene (NCBI)MALSU1  115416  mitochondrial assembly of ribosomal large subunit 1
AliasesC7orf30; mtRsfA
GeneCards (Weizmann)MALSU1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:23299321-23309561 [Contig_View]  MALSU1 [Vega]
TCGA cBioPortalMALSU1
AceView (NCBI)MALSU1
Genatlas (Paris)MALSU1
WikiGenes115416
SOURCE (Princeton)MALSU1
Genetics Home Reference (NIH)MALSU1
Genomic and cartography
GoldenPath hg38 (UCSC)MALSU1  -     chr7:23299321-23309561 +  7p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MALSU1  -     7p15.3   [Description]    (hg19-Feb_2009)
EnsemblMALSU1 - 7p15.3 [CytoView hg19]  MALSU1 - 7p15.3 [CytoView hg38]
Mapping of homologs : NCBIMALSU1 [Mapview hg19]  MALSU1 [Mapview hg38]
OMIM614624   
Gene and transcription
Genbank (Entrez)AK127742 AK316559 AL832885 BC012331 BC065766
RefSeq transcript (Entrez)NM_138446
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MALSU1
Cluster EST : UnigeneHs.87385 [ NCBI ]
CGAP (NCI)Hs.87385
Gene ExpressionMALSU1 [ NCBI-GEO ]   MALSU1 [ EBI - ARRAY_EXPRESS ]   MALSU1 [ SEEK ]   MALSU1 [ MEM ]
Gene Expression Viewer (FireBrowse)MALSU1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115416
GTEX Portal (Tissue expression)MALSU1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EH3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EH3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EH3
Splice isoforms : SwissVarQ96EH3
PhosPhoSitePlusQ96EH3
Domains : Interpro (EBI)Iojap/RsfS/C7orf30   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MALSU1
DMDM Disease mutations115416
Blocks (Seattle)MALSU1
SuperfamilyQ96EH3
Peptide AtlasQ96EH3
HPRD12918
IPIIPI00061492   
Protein Interaction databases
DIP (DOE-UCLA)Q96EH3
IntAct (EBI)Q96EH3
BioGRIDMALSU1
STRING (EMBL)MALSU1
ZODIACMALSU1
Ontologies - Pathways
QuickGOQ96EH3
Ontology : AmiGOprotein binding  mitochondrion  mitochondrial matrix  cytosol  ribosomal large subunit biogenesis  ribosomal large subunit binding  negative regulation of mitochondrial translation  negative regulation of ribosome biogenesis  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrial matrix  cytosol  ribosomal large subunit biogenesis  ribosomal large subunit binding  negative regulation of mitochondrial translation  negative regulation of ribosome biogenesis  
NDEx NetworkMALSU1
Atlas of Cancer Signalling NetworkMALSU1
Wikipedia pathwaysMALSU1
Orthology - Evolution
OrthoDB115416
Phylogenetic Trees/Animal Genes : TreeFamMALSU1
HOVERGENQ96EH3
HOGENOMQ96EH3
Homologs : HomoloGeneMALSU1
Homology/Alignments : Family Browser (UCSC)MALSU1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMALSU1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MALSU1
dbVarMALSU1
ClinVarMALSU1
1000_GenomesMALSU1 
Exome Variant ServerMALSU1
ExAC (Exome Aggregation Consortium)MALSU1 (select the gene name)
Genetic variants : HAPMAP115416
Genomic Variants (DGV)MALSU1 [DGVbeta]
DECIPHERMALSU1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMALSU1 
Mutations
ICGC Data PortalMALSU1 
TCGA Data PortalMALSU1 
Broad Tumor PortalMALSU1
OASIS PortalMALSU1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMALSU1
BioMutasearch MALSU1
DgiDB (Drug Gene Interaction Database)MALSU1
DoCM (Curated mutations)MALSU1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MALSU1 (select a term)
intoGenMALSU1
Cancer3DMALSU1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614624   
Orphanet
MedgenMALSU1
Genetic Testing Registry MALSU1
NextProtQ96EH3 [Medical]
TSGene115416
GENETestsMALSU1
Target ValidationMALSU1
Huge Navigator MALSU1 [HugePedia]
snp3D : Map Gene to Disease115416
BioCentury BCIQMALSU1
ClinGenMALSU1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115416
Chemical/Pharm GKB GenePA134866345
Clinical trialMALSU1
Miscellaneous
canSAR (ICR)MALSU1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMALSU1
EVEXMALSU1
GoPubMedMALSU1
iHOPMALSU1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:52 CEST 2017

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