Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MAMSTR (MEF2 activating motif and SAP domain containing transcriptional regulator)

Identity

Alias_symbol (synonym)MASTR
FLJ36070
Other alias
HGNC (Hugo) MAMSTR
LocusID (NCBI) 284358
Atlas_Id 68775
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48712998 and ends at 48719719 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAMSTR   26689
Cards
Entrez_Gene (NCBI)MAMSTR  284358  MEF2 activating motif and SAP domain containing transcriptional regulator
AliasesMASTR
GeneCards (Weizmann)MAMSTR
Ensembl hg19 (Hinxton)ENSG00000176909 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176909 [Gene_View]  chr19:48712998-48719719 [Contig_View]  MAMSTR [Vega]
ICGC DataPortalENSG00000176909
TCGA cBioPortalMAMSTR
AceView (NCBI)MAMSTR
Genatlas (Paris)MAMSTR
WikiGenes284358
SOURCE (Princeton)MAMSTR
Genetics Home Reference (NIH)MAMSTR
Genomic and cartography
GoldenPath hg38 (UCSC)MAMSTR  -     chr19:48712998-48719719 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAMSTR  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblMAMSTR - 19q13.33 [CytoView hg19]  MAMSTR - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIMAMSTR [Mapview hg19]  MAMSTR [Mapview hg38]
OMIM610349   
Gene and transcription
Genbank (Entrez)AK093389 AK131427 BC105056 BC105058 BC106047
RefSeq transcript (Entrez)NM_001130915 NM_001297753 NM_182574
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAMSTR
Cluster EST : UnigeneHs.191815 [ NCBI ]
CGAP (NCI)Hs.191815
Alternative Splicing GalleryENSG00000176909
Gene ExpressionMAMSTR [ NCBI-GEO ]   MAMSTR [ EBI - ARRAY_EXPRESS ]   MAMSTR [ SEEK ]   MAMSTR [ MEM ]
Gene Expression Viewer (FireBrowse)MAMSTR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284358
GTEX Portal (Tissue expression)MAMSTR
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZN01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZN01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZN01
Splice isoforms : SwissVarQ6ZN01
PhosPhoSitePlusQ6ZN01
Domaine pattern : Prosite (Expaxy)SAP (PS50800)   
Domains : Interpro (EBI)SAP_dom   
Domain families : Pfam (Sanger)SAP (PF02037)   
Domain families : Pfam (NCBI)pfam02037   
Domain families : Smart (EMBL)SAP (SM00513)  
Conserved Domain (NCBI)MAMSTR
DMDM Disease mutations284358
Blocks (Seattle)MAMSTR
SuperfamilyQ6ZN01
Human Protein AtlasENSG00000176909
Peptide AtlasQ6ZN01
HPRD08204
IPIIPI00167845   IPI00640666   IPI00654637   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZN01
IntAct (EBI)Q6ZN01
FunCoupENSG00000176909
BioGRIDMAMSTR
STRING (EMBL)MAMSTR
ZODIACMAMSTR
Ontologies - Pathways
QuickGOQ6ZN01
Ontology : AmiGOtranscription factor activity, RNA polymerase II transcription factor binding  nucleus  transcription, DNA-templated  positive regulation of myotube differentiation  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBItranscription factor activity, RNA polymerase II transcription factor binding  nucleus  transcription, DNA-templated  positive regulation of myotube differentiation  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkMAMSTR
Atlas of Cancer Signalling NetworkMAMSTR
Wikipedia pathwaysMAMSTR
Orthology - Evolution
OrthoDB284358
GeneTree (enSembl)ENSG00000176909
Phylogenetic Trees/Animal Genes : TreeFamMAMSTR
HOVERGENQ6ZN01
HOGENOMQ6ZN01
Homologs : HomoloGeneMAMSTR
Homology/Alignments : Family Browser (UCSC)MAMSTR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAMSTR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAMSTR
dbVarMAMSTR
ClinVarMAMSTR
1000_GenomesMAMSTR 
Exome Variant ServerMAMSTR
ExAC (Exome Aggregation Consortium)MAMSTR (select the gene name)
Genetic variants : HAPMAP284358
Genomic Variants (DGV)MAMSTR [DGVbeta]
DECIPHERMAMSTR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAMSTR 
Mutations
ICGC Data PortalMAMSTR 
TCGA Data PortalMAMSTR 
Broad Tumor PortalMAMSTR
OASIS PortalMAMSTR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAMSTR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAMSTR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAMSTR
DgiDB (Drug Gene Interaction Database)MAMSTR
DoCM (Curated mutations)MAMSTR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAMSTR (select a term)
intoGenMAMSTR
Cancer3DMAMSTR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610349   
Orphanet
MedgenMAMSTR
Genetic Testing Registry MAMSTR
NextProtQ6ZN01 [Medical]
TSGene284358
GENETestsMAMSTR
Target ValidationMAMSTR
Huge Navigator MAMSTR [HugePedia]
snp3D : Map Gene to Disease284358
BioCentury BCIQMAMSTR
ClinGenMAMSTR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284358
Chemical/Pharm GKB GenePA165393645
Clinical trialMAMSTR
Miscellaneous
canSAR (ICR)MAMSTR (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAMSTR
EVEXMAMSTR
GoPubMedMAMSTR
iHOPMAMSTR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:26:52 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.