Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MANSC1 (MANSC domain containing 1)

Identity

Alias_symbol (synonym)FLJ10298
LOH12CR3
Other alias9130403P13Rik
HGNC (Hugo) MANSC1
LocusID (NCBI) 54682
Atlas_Id 68786
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 12329284 and ends at 12350235 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SOX5 (12p12.1) / MANSC1 (12p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MANSC1   25505
Cards
Entrez_Gene (NCBI)MANSC1  54682  MANSC domain containing 1
Aliases9130403P13Rik; LOH12CR3
GeneCards (Weizmann)MANSC1
Ensembl hg19 (Hinxton)ENSG00000111261 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111261 [Gene_View]  chr12:12329284-12350235 [Contig_View]  MANSC1 [Vega]
ICGC DataPortalENSG00000111261
TCGA cBioPortalMANSC1
AceView (NCBI)MANSC1
Genatlas (Paris)MANSC1
WikiGenes54682
SOURCE (Princeton)MANSC1
Genetics Home Reference (NIH)MANSC1
Genomic and cartography
GoldenPath hg38 (UCSC)MANSC1  -     chr12:12329284-12350235 -  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MANSC1  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblMANSC1 - 12p13.2 [CytoView hg19]  MANSC1 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBIMANSC1 [Mapview hg19]  MANSC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001160 AK023622 AK298681 AY358563 BC032998
RefSeq transcript (Entrez)NM_018050
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MANSC1
Cluster EST : UnigeneHs.591145 [ NCBI ]
CGAP (NCI)Hs.591145
Alternative Splicing GalleryENSG00000111261
Gene ExpressionMANSC1 [ NCBI-GEO ]   MANSC1 [ EBI - ARRAY_EXPRESS ]   MANSC1 [ SEEK ]   MANSC1 [ MEM ]
Gene Expression Viewer (FireBrowse)MANSC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54682
GTEX Portal (Tissue expression)MANSC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8J5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8J5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8J5
Splice isoforms : SwissVarQ9H8J5
PhosPhoSitePlusQ9H8J5
Domaine pattern : Prosite (Expaxy)MANSC (PS50986)   
Domains : Interpro (EBI)MANSC_dom    MANSC_N   
Domain families : Pfam (Sanger)MANEC (PF07502)   
Domain families : Pfam (NCBI)pfam07502   
Domain families : Smart (EMBL)MANEC (SM00765)  
Conserved Domain (NCBI)MANSC1
DMDM Disease mutations54682
Blocks (Seattle)MANSC1
SuperfamilyQ9H8J5
Human Protein AtlasENSG00000111261
Peptide AtlasQ9H8J5
HPRD10067
IPIIPI00032288   IPI01009960   IPI00794565   IPI01013703   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8J5
IntAct (EBI)Q9H8J5
FunCoupENSG00000111261
BioGRIDMANSC1
STRING (EMBL)MANSC1
ZODIACMANSC1
Ontologies - Pathways
QuickGOQ9H8J5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkMANSC1
Atlas of Cancer Signalling NetworkMANSC1
Wikipedia pathwaysMANSC1
Orthology - Evolution
OrthoDB54682
GeneTree (enSembl)ENSG00000111261
Phylogenetic Trees/Animal Genes : TreeFamMANSC1
HOVERGENQ9H8J5
HOGENOMQ9H8J5
Homologs : HomoloGeneMANSC1
Homology/Alignments : Family Browser (UCSC)MANSC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMANSC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MANSC1
dbVarMANSC1
ClinVarMANSC1
1000_GenomesMANSC1 
Exome Variant ServerMANSC1
ExAC (Exome Aggregation Consortium)MANSC1 (select the gene name)
Genetic variants : HAPMAP54682
Genomic Variants (DGV)MANSC1 [DGVbeta]
DECIPHERMANSC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMANSC1 
Mutations
ICGC Data PortalMANSC1 
TCGA Data PortalMANSC1 
Broad Tumor PortalMANSC1
OASIS PortalMANSC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMANSC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMANSC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MANSC1
DgiDB (Drug Gene Interaction Database)MANSC1
DoCM (Curated mutations)MANSC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MANSC1 (select a term)
intoGenMANSC1
Cancer3DMANSC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMANSC1
Genetic Testing Registry MANSC1
NextProtQ9H8J5 [Medical]
TSGene54682
GENETestsMANSC1
Target ValidationMANSC1
Huge Navigator MANSC1 [HugePedia]
snp3D : Map Gene to Disease54682
BioCentury BCIQMANSC1
ClinGenMANSC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54682
Chemical/Pharm GKB GenePA134948173
Clinical trialMANSC1
Miscellaneous
canSAR (ICR)MANSC1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMANSC1
EVEXMANSC1
GoPubMedMANSC1
iHOPMANSC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:26:54 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.