Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MANSC4 (MANSC domain containing 4)

Identity

Other alias-
HGNC (Hugo) MANSC4
LocusID (NCBI) 100287284
Atlas_Id 68787
Location 12p11.22  [Link to chromosome band 12p11]
Location_base_pair Starts at 27762666 and ends at 27771276 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MANSC4   40023
Cards
Entrez_Gene (NCBI)MANSC4  100287284  MANSC domain containing 4
Aliases
GeneCards (Weizmann)MANSC4
Ensembl hg19 (Hinxton)ENSG00000205693 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205693 [Gene_View]  chr12:27762666-27771276 [Contig_View]  MANSC4 [Vega]
ICGC DataPortalENSG00000205693
TCGA cBioPortalMANSC4
AceView (NCBI)MANSC4
Genatlas (Paris)MANSC4
WikiGenes100287284
SOURCE (Princeton)MANSC4
Genetics Home Reference (NIH)MANSC4
Genomic and cartography
GoldenPath hg38 (UCSC)MANSC4  -     chr12:27762666-27771276 -  12p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MANSC4  -     12p11.22   [Description]    (hg19-Feb_2009)
EnsemblMANSC4 - 12p11.22 [CytoView hg19]  MANSC4 - 12p11.22 [CytoView hg38]
Mapping of homologs : NCBIMANSC4 [Mapview hg19]  MANSC4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001146221
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MANSC4
Cluster EST : UnigeneHs.202178 [ NCBI ]
CGAP (NCI)Hs.202178
Alternative Splicing GalleryENSG00000205693
Gene ExpressionMANSC4 [ NCBI-GEO ]   MANSC4 [ EBI - ARRAY_EXPRESS ]   MANSC4 [ SEEK ]   MANSC4 [ MEM ]
Gene Expression Viewer (FireBrowse)MANSC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287284
GTEX Portal (Tissue expression)MANSC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NHS7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NHS7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NHS7
Splice isoforms : SwissVarA6NHS7
PhosPhoSitePlusA6NHS7
Domaine pattern : Prosite (Expaxy)MANSC (PS50986)   
Domains : Interpro (EBI)MANSC_dom    MANSC_N   
Domain families : Pfam (Sanger)MANEC (PF07502)   
Domain families : Pfam (NCBI)pfam07502   
Domain families : Smart (EMBL)MANEC (SM00765)  
Conserved Domain (NCBI)MANSC4
DMDM Disease mutations100287284
Blocks (Seattle)MANSC4
SuperfamilyA6NHS7
Human Protein AtlasENSG00000205693
Peptide AtlasA6NHS7
IPIIPI00929141   
Protein Interaction databases
DIP (DOE-UCLA)A6NHS7
IntAct (EBI)A6NHS7
FunCoupENSG00000205693
BioGRIDMANSC4
STRING (EMBL)MANSC4
ZODIACMANSC4
Ontologies - Pathways
QuickGOA6NHS7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkMANSC4
Atlas of Cancer Signalling NetworkMANSC4
Wikipedia pathwaysMANSC4
Orthology - Evolution
OrthoDB100287284
GeneTree (enSembl)ENSG00000205693
Phylogenetic Trees/Animal Genes : TreeFamMANSC4
HOVERGENA6NHS7
HOGENOMA6NHS7
Homologs : HomoloGeneMANSC4
Homology/Alignments : Family Browser (UCSC)MANSC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMANSC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MANSC4
dbVarMANSC4
ClinVarMANSC4
1000_GenomesMANSC4 
Exome Variant ServerMANSC4
ExAC (Exome Aggregation Consortium)MANSC4 (select the gene name)
Genetic variants : HAPMAP100287284
Genomic Variants (DGV)MANSC4 [DGVbeta]
DECIPHERMANSC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMANSC4 
Mutations
ICGC Data PortalMANSC4 
TCGA Data PortalMANSC4 
Broad Tumor PortalMANSC4
OASIS PortalMANSC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMANSC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMANSC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MANSC4
DgiDB (Drug Gene Interaction Database)MANSC4
DoCM (Curated mutations)MANSC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MANSC4 (select a term)
intoGenMANSC4
Cancer3DMANSC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMANSC4
Genetic Testing Registry MANSC4
NextProtA6NHS7 [Medical]
TSGene100287284
GENETestsMANSC4
Huge Navigator MANSC4 [HugePedia]
snp3D : Map Gene to Disease100287284
BioCentury BCIQMANSC4
ClinGenMANSC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287284
Chemical/Pharm GKB GenePA166049046
Clinical trialMANSC4
Miscellaneous
canSAR (ICR)MANSC4 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMANSC4
EVEXMANSC4
GoPubMedMANSC4
iHOPMANSC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:37:49 CEST 2017

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