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MAP1A (microtubule-associated protein 1A)

Identity

Alias_namesMAP1L
Other aliasMTAP1A
HGNC (Hugo) MAP1A
LocusID (NCBI) 4130
Atlas_Id 68790
Location 15q15.3  [Link to chromosome band 15q15]
Location_base_pair Starts at 43809806 and ends at 43823818 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ELP2 (18q12.2) / MAP1A (15q15.3)HIPK4 (19q13.2) / MAP1A (15q15.3)MAP1A (15q15.3) / SPHK2 (19q13.33)
MAP1A (15q15.3) / WDR31 (9q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAP1A   6835
Cards
Entrez_Gene (NCBI)MAP1A  4130  microtubule-associated protein 1A
AliasesMAP1L; MTAP1A
GeneCards (Weizmann)MAP1A
Ensembl hg19 (Hinxton)ENSG00000166963 [Gene_View]  chr15:43809806-43823818 [Contig_View]  MAP1A [Vega]
Ensembl hg38 (Hinxton)ENSG00000166963 [Gene_View]  chr15:43809806-43823818 [Contig_View]  MAP1A [Vega]
ICGC DataPortalENSG00000166963
TCGA cBioPortalMAP1A
AceView (NCBI)MAP1A
Genatlas (Paris)MAP1A
WikiGenes4130
SOURCE (Princeton)MAP1A
Genetics Home Reference (NIH)MAP1A
Genomic and cartography
GoldenPath hg19 (UCSC)MAP1A  -     chr15:43809806-43823818 +  15q15.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAP1A  -     15q15.3   [Description]    (hg38-Dec_2013)
EnsemblMAP1A - 15q15.3 [CytoView hg19]  MAP1A - 15q15.3 [CytoView hg38]
Mapping of homologs : NCBIMAP1A [Mapview hg19]  MAP1A [Mapview hg38]
OMIM600178   
Gene and transcription
Genbank (Entrez)AF095910 AF200415 AI124707 AK291052 AW296788
RefSeq transcript (Entrez)NM_002373
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)MAP1A
Cluster EST : UnigeneHs.619338 [ NCBI ]
CGAP (NCI)Hs.619338
Alternative Splicing GalleryENSG00000166963
Gene ExpressionMAP1A [ NCBI-GEO ]   MAP1A [ EBI - ARRAY_EXPRESS ]   MAP1A [ SEEK ]   MAP1A [ MEM ]
Gene Expression Viewer (FireBrowse)MAP1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4130
GTEX Portal (Tissue expression)MAP1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78559   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78559  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78559
Splice isoforms : SwissVarP78559
PhosPhoSitePlusP78559
Domains : Interpro (EBI)Beta-lactamas-like    MAP1    MAP1A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MAP1A
DMDM Disease mutations4130
Blocks (Seattle)MAP1A
SuperfamilyP78559
Human Protein AtlasENSG00000166963
Peptide AtlasP78559
HPRD02549
IPIIPI00887765   IPI00984420   IPI00020356   
Protein Interaction databases
DIP (DOE-UCLA)P78559
IntAct (EBI)P78559
FunCoupENSG00000166963
BioGRIDMAP1A
STRING (EMBL)MAP1A
ZODIACMAP1A
Ontologies - Pathways
QuickGOP78559
Ontology : AmiGOmicrotubule cytoskeleton organization  positive regulation of defense response to virus by host  structural molecule activity  protein binding  cytosol  microtubule  microtubule associated complex  sensory perception of sound  microtubule binding  activation of mitophagy in response to mitochondrial depolarization  
Ontology : EGO-EBImicrotubule cytoskeleton organization  positive regulation of defense response to virus by host  structural molecule activity  protein binding  cytosol  microtubule  microtubule associated complex  sensory perception of sound  microtubule binding  activation of mitophagy in response to mitochondrial depolarization  
NDEx NetworkMAP1A
Atlas of Cancer Signalling NetworkMAP1A
Wikipedia pathwaysMAP1A
Orthology - Evolution
OrthoDB4130
GeneTree (enSembl)ENSG00000166963
Phylogenetic Trees/Animal Genes : TreeFamMAP1A
HOVERGENP78559
HOGENOMP78559
Homologs : HomoloGeneMAP1A
Homology/Alignments : Family Browser (UCSC)MAP1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAP1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAP1A
dbVarMAP1A
ClinVarMAP1A
1000_GenomesMAP1A 
Exome Variant ServerMAP1A
ExAC (Exome Aggregation Consortium)MAP1A (select the gene name)
Genetic variants : HAPMAP4130
Genomic Variants (DGV)MAP1A [DGVbeta]
DECIPHER (Syndromes)15:43809806-43823818  ENSG00000166963
CONAN: Copy Number AnalysisMAP1A 
Mutations
ICGC Data PortalMAP1A 
TCGA Data PortalMAP1A 
Broad Tumor PortalMAP1A
OASIS PortalMAP1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAP1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAP1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAP1A
DgiDB (Drug Gene Interaction Database)MAP1A
DoCM (Curated mutations)MAP1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAP1A (select a term)
intoGenMAP1A
Cancer3DMAP1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600178   
Orphanet
MedgenMAP1A
Genetic Testing Registry MAP1A
NextProtP78559 [Medical]
TSGene4130
GENETestsMAP1A
Huge Navigator MAP1A [HugePedia]
snp3D : Map Gene to Disease4130
BioCentury BCIQMAP1A
ClinGenMAP1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4130
Chemical/Pharm GKB GenePA30580
Clinical trialMAP1A
Miscellaneous
canSAR (ICR)MAP1A (select the gene name)
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAP1A
EVEXMAP1A
GoPubMedMAP1A
iHOPMAP1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:40 CET 2017

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