Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MAP1LC3B (microtubule associated protein 1 light chain 3 beta)

Identity

Alias_symbol (synonym)ATG8F
Other aliasLC3B
MAP1A/1BLC3
MAP1LC3B-a
HGNC (Hugo) MAP1LC3B
LocusID (NCBI) 81631
Atlas_Id 51202
Location 16q24.2  [Link to chromosome band 16q24]
Location_base_pair Starts at 87392195 and ends at 87404774 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LOC100507412 (-) / MAP1LC3B (16q24.2)MAP1LC3B (16q24.2) / BCL2L11 (2q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAP1LC3B   13352
Cards
Entrez_Gene (NCBI)MAP1LC3B  81631  microtubule associated protein 1 light chain 3 beta
AliasesATG8F; LC3B; MAP1A/1BLC3; MAP1LC3B-a
GeneCards (Weizmann)MAP1LC3B
Ensembl hg19 (Hinxton)ENSG00000140941 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140941 [Gene_View]  chr16:87392195-87404774 [Contig_View]  MAP1LC3B [Vega]
ICGC DataPortalENSG00000140941
TCGA cBioPortalMAP1LC3B
AceView (NCBI)MAP1LC3B
Genatlas (Paris)MAP1LC3B
WikiGenes81631
SOURCE (Princeton)MAP1LC3B
Genetics Home Reference (NIH)MAP1LC3B
Genomic and cartography
GoldenPath hg38 (UCSC)MAP1LC3B  -     chr16:87392195-87404774 +  16q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAP1LC3B  -     16q24.2   [Description]    (hg19-Feb_2009)
EnsemblMAP1LC3B - 16q24.2 [CytoView hg19]  MAP1LC3B - 16q24.2 [CytoView hg38]
Mapping of homologs : NCBIMAP1LC3B [Mapview hg19]  MAP1LC3B [Mapview hg38]
OMIM609604   
Gene and transcription
Genbank (Entrez)AF087871 AF183417 AF303888 AK024571 AK025556
RefSeq transcript (Entrez)NM_022818
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAP1LC3B
Cluster EST : UnigeneHs.356061 [ NCBI ]
CGAP (NCI)Hs.356061
Alternative Splicing GalleryENSG00000140941
Gene ExpressionMAP1LC3B [ NCBI-GEO ]   MAP1LC3B [ EBI - ARRAY_EXPRESS ]   MAP1LC3B [ SEEK ]   MAP1LC3B [ MEM ]
Gene Expression Viewer (FireBrowse)MAP1LC3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81631
GTEX Portal (Tissue expression)MAP1LC3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZQ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZQ8
Splice isoforms : SwissVarQ9GZQ8
PhosPhoSitePlusQ9GZQ8
Domains : Interpro (EBI)Atg8-like    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)Atg8 (PF02991)   
Domain families : Pfam (NCBI)pfam02991   
Conserved Domain (NCBI)MAP1LC3B
DMDM Disease mutations81631
Blocks (Seattle)MAP1LC3B
PDB (SRS)1V49    2LUE    2N9X    2ZJD    3VTU    3VTV    3VTW    3WAO    3X0W    4WAA    5D94    5DCN   
PDB (PDBSum)1V49    2LUE    2N9X    2ZJD    3VTU    3VTV    3VTW    3WAO    3X0W    4WAA    5D94    5DCN   
PDB (IMB)1V49    2LUE    2N9X    2ZJD    3VTU    3VTV    3VTW    3WAO    3X0W    4WAA    5D94    5DCN   
PDB (RSDB)1V49    2LUE    2N9X    2ZJD    3VTU    3VTV    3VTW    3WAO    3X0W    4WAA    5D94    5DCN   
Structural Biology KnowledgeBase1V49    2LUE    2N9X    2ZJD    3VTU    3VTV    3VTW    3WAO    3X0W    4WAA    5D94    5DCN   
SCOP (Structural Classification of Proteins)1V49    2LUE    2N9X    2ZJD    3VTU    3VTV    3VTW    3WAO    3X0W    4WAA    5D94    5DCN   
CATH (Classification of proteins structures)1V49    2LUE    2N9X    2ZJD    3VTU    3VTV    3VTW    3WAO    3X0W    4WAA    5D94    5DCN   
SuperfamilyQ9GZQ8
Human Protein AtlasENSG00000140941
Peptide AtlasQ9GZQ8
HPRD14358
IPIIPI00220482   IPI01012240   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZQ8
IntAct (EBI)Q9GZQ8
FunCoupENSG00000140941
BioGRIDMAP1LC3B
STRING (EMBL)MAP1LC3B
ZODIACMAP1LC3B
Ontologies - Pathways
QuickGOQ9GZQ8
Ontology : AmiGOautophagosome membrane  mitophagy  protein binding  intracellular  mitochondrion  autophagosome  cytosol  microtubule  axoneme  autophagy  endomembrane system  macroautophagy  organelle membrane  cytoplasmic vesicle  ubiquitin protein ligase binding  membrane organization  autophagosome maturation  
Ontology : EGO-EBIautophagosome membrane  mitophagy  protein binding  intracellular  mitochondrion  autophagosome  cytosol  microtubule  axoneme  autophagy  endomembrane system  macroautophagy  organelle membrane  cytoplasmic vesicle  ubiquitin protein ligase binding  membrane organization  autophagosome maturation  
NDEx NetworkMAP1LC3B
Atlas of Cancer Signalling NetworkMAP1LC3B
Wikipedia pathwaysMAP1LC3B
Orthology - Evolution
OrthoDB81631
GeneTree (enSembl)ENSG00000140941
Phylogenetic Trees/Animal Genes : TreeFamMAP1LC3B
HOVERGENQ9GZQ8
HOGENOMQ9GZQ8
Homologs : HomoloGeneMAP1LC3B
Homology/Alignments : Family Browser (UCSC)MAP1LC3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAP1LC3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAP1LC3B
dbVarMAP1LC3B
ClinVarMAP1LC3B
1000_GenomesMAP1LC3B 
Exome Variant ServerMAP1LC3B
ExAC (Exome Aggregation Consortium)MAP1LC3B (select the gene name)
Genetic variants : HAPMAP81631
Genomic Variants (DGV)MAP1LC3B [DGVbeta]
DECIPHERMAP1LC3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAP1LC3B 
Mutations
ICGC Data PortalMAP1LC3B 
TCGA Data PortalMAP1LC3B 
Broad Tumor PortalMAP1LC3B
OASIS PortalMAP1LC3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAP1LC3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAP1LC3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAP1LC3B
DgiDB (Drug Gene Interaction Database)MAP1LC3B
DoCM (Curated mutations)MAP1LC3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAP1LC3B (select a term)
intoGenMAP1LC3B
Cancer3DMAP1LC3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609604   
Orphanet
MedgenMAP1LC3B
Genetic Testing Registry MAP1LC3B
NextProtQ9GZQ8 [Medical]
TSGene81631
GENETestsMAP1LC3B
Huge Navigator MAP1LC3B [HugePedia]
snp3D : Map Gene to Disease81631
BioCentury BCIQMAP1LC3B
ClinGenMAP1LC3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81631
Chemical/Pharm GKB GenePA134923100
Clinical trialMAP1LC3B
Miscellaneous
canSAR (ICR)MAP1LC3B (select the gene name)
Probes
Litterature
PubMed125 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAP1LC3B
EVEXMAP1LC3B
GoPubMedMAP1LC3B
iHOPMAP1LC3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:24:02 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.