Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MAP1LC3B (microtubule associated protein 1 light chain 3 beta)

Identity

Alias (NCBI)ATG8F
LC3B
MAP1A/1BLC3
MAP1LC3B-a
HGNC (Hugo) MAP1LC3B
HGNC Alias symbATG8F
LocusID (NCBI) 81631
Atlas_Id 51202
Location 16q24.2  [Link to chromosome band 16q24]
Location_base_pair Starts at 87392336 and ends at 87404774 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LOC100507412 (-) / MAP1LC3B (16q24.2)MAP1LC3B (16q24.2) / BCL2L11 (2q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MAP1LC3B   13352
Cards
Entrez_Gene (NCBI)MAP1LC3B    microtubule associated protein 1 light chain 3 beta
AliasesATG8F; LC3B; MAP1A/1BLC3; MAP1LC3B-a
GeneCards (Weizmann)MAP1LC3B
Ensembl hg19 (Hinxton)ENSG00000140941 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140941 [Gene_View]  ENSG00000140941 [Sequence]  chr16:87392336-87404774 [Contig_View]  MAP1LC3B [Vega]
ICGC DataPortalENSG00000140941
TCGA cBioPortalMAP1LC3B
AceView (NCBI)MAP1LC3B
Genatlas (Paris)MAP1LC3B
SOURCE (Princeton)MAP1LC3B
Genetics Home Reference (NIH)MAP1LC3B
Genomic and cartography
GoldenPath hg38 (UCSC)MAP1LC3B  -     chr16:87392336-87404774 +  16q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAP1LC3B  -     16q24.2   [Description]    (hg19-Feb_2009)
GoldenPathMAP1LC3B - 16q24.2 [CytoView hg19]  MAP1LC3B - 16q24.2 [CytoView hg38]
ImmunoBaseENSG00000140941
Genome Data Viewer NCBIMAP1LC3B [Mapview hg19]  
OMIM609604   
Gene and transcription
Genbank (Entrez)AF087871 AF183417 AF303888 AK024571 AK025556
RefSeq transcript (Entrez)NM_022818
Consensus coding sequences : CCDS (NCBI)MAP1LC3B
Gene ExpressionMAP1LC3B [ NCBI-GEO ]   MAP1LC3B [ EBI - ARRAY_EXPRESS ]   MAP1LC3B [ SEEK ]   MAP1LC3B [ MEM ]
Gene Expression Viewer (FireBrowse)MAP1LC3B [ Firebrowse - Broad ]
GenevisibleExpression of MAP1LC3B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81631
GTEX Portal (Tissue expression)MAP1LC3B
Human Protein AtlasENSG00000140941-MAP1LC3B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZQ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZQ8
PhosPhoSitePlusQ9GZQ8
Domains : Interpro (EBI)Atg8-like    Ubiquitin-like_domsf   
Domain families : Pfam (Sanger)Atg8 (PF02991)   
Domain families : Pfam (NCBI)pfam02991   
Conserved Domain (NCBI)MAP1LC3B
PDB (RSDB)1V49    2LUE    2N9X    2ZJD    3VTU    3VTV    3VTW    3WAO    3X0W    4WAA    5D94    5DCN    5GMV    5MS2    5MS5    5MS6    5V4K    5W9A    5XAC    5XAD    5XAE    6J04    6LAN   
PDB Europe1V49    2LUE    2N9X    2ZJD    3VTU    3VTV    3VTW    3WAO    3X0W    4WAA    5D94    5DCN    5GMV    5MS2    5MS5    5MS6    5V4K    5W9A    5XAC    5XAD    5XAE    6J04    6LAN   
PDB (PDBSum)1V49    2LUE    2N9X    2ZJD    3VTU    3VTV    3VTW    3WAO    3X0W    4WAA    5D94    5DCN    5GMV    5MS2    5MS5    5MS6    5V4K    5W9A    5XAC    5XAD    5XAE    6J04    6LAN   
PDB (IMB)1V49    2LUE    2N9X    2ZJD    3VTU    3VTV    3VTW    3WAO    3X0W    4WAA    5D94    5DCN    5GMV    5MS2    5MS5    5MS6    5V4K    5W9A    5XAC    5XAD    5XAE    6J04    6LAN   
Structural Biology KnowledgeBase1V49    2LUE    2N9X    2ZJD    3VTU    3VTV    3VTW    3WAO    3X0W    4WAA    5D94    5DCN    5GMV    5MS2    5MS5    5MS6    5V4K    5W9A    5XAC    5XAD    5XAE    6J04    6LAN   
SCOP (Structural Classification of Proteins)1V49    2LUE    2N9X    2ZJD    3VTU    3VTV    3VTW    3WAO    3X0W    4WAA    5D94    5DCN    5GMV    5MS2    5MS5    5MS6    5V4K    5W9A    5XAC    5XAD    5XAE    6J04    6LAN   
CATH (Classification of proteins structures)1V49    2LUE    2N9X    2ZJD    3VTU    3VTV    3VTW    3WAO    3X0W    4WAA    5D94    5DCN    5GMV    5MS2    5MS5    5MS6    5V4K    5W9A    5XAC    5XAD    5XAE    6J04    6LAN   
SuperfamilyQ9GZQ8
AlphaFold pdb e-kbQ9GZQ8   
Human Protein Atlas [tissue]ENSG00000140941-MAP1LC3B [tissue]
HPRD14358
Protein Interaction databases
DIP (DOE-UCLA)Q9GZQ8
IntAct (EBI)Q9GZQ8
BioGRIDMAP1LC3B
STRING (EMBL)MAP1LC3B
ZODIACMAP1LC3B
Ontologies - Pathways
QuickGOQ9GZQ8
Ontology : AmiGOautophagosome assembly  autophagosome membrane  autophagosome membrane  autophagosome membrane  autophagy of mitochondrion  autophagy of mitochondrion  mitophagy  pexophagy  protein binding  mitochondrion  autophagosome  autophagosome  autophagosome  cytosol  cytosol  microtubule  axoneme  autophagy  cellular response to nitrogen starvation  microtubule binding  cellular response to starvation  endomembrane system  macroautophagy  macroautophagy  macroautophagy  organelle membrane  cytoplasmic vesicle  ubiquitin protein ligase binding  ubiquitin protein ligase binding  intracellular membrane-bounded organelle  autophagosome maturation  autophagosome maturation  autophagosome maturation  
Ontology : EGO-EBIautophagosome assembly  autophagosome membrane  autophagosome membrane  autophagosome membrane  autophagy of mitochondrion  autophagy of mitochondrion  mitophagy  pexophagy  protein binding  mitochondrion  autophagosome  autophagosome  autophagosome  cytosol  cytosol  microtubule  axoneme  autophagy  cellular response to nitrogen starvation  microtubule binding  cellular response to starvation  endomembrane system  macroautophagy  macroautophagy  macroautophagy  organelle membrane  cytoplasmic vesicle  ubiquitin protein ligase binding  ubiquitin protein ligase binding  intracellular membrane-bounded organelle  autophagosome maturation  autophagosome maturation  autophagosome maturation  
NDEx NetworkMAP1LC3B
Atlas of Cancer Signalling NetworkMAP1LC3B
Wikipedia pathwaysMAP1LC3B
Orthology - Evolution
OrthoDB81631
GeneTree (enSembl)ENSG00000140941
Phylogenetic Trees/Animal Genes : TreeFamMAP1LC3B
Homologs : HomoloGeneMAP1LC3B
Homology/Alignments : Family Browser (UCSC)MAP1LC3B
Gene fusions - Rearrangements
Fusion : QuiverMAP1LC3B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAP1LC3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAP1LC3B
dbVarMAP1LC3B
ClinVarMAP1LC3B
MonarchMAP1LC3B
1000_GenomesMAP1LC3B 
Exome Variant ServerMAP1LC3B
GNOMAD BrowserENSG00000140941
Varsome BrowserMAP1LC3B
ACMGMAP1LC3B variants
VarityQ9GZQ8
Genomic Variants (DGV)MAP1LC3B [DGVbeta]
DECIPHERMAP1LC3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAP1LC3B 
Mutations
ICGC Data PortalMAP1LC3B 
TCGA Data PortalMAP1LC3B 
Broad Tumor PortalMAP1LC3B
OASIS PortalMAP1LC3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAP1LC3B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMAP1LC3B
Mutations and Diseases : HGMDMAP1LC3B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMAP1LC3B
DgiDB (Drug Gene Interaction Database)MAP1LC3B
DoCM (Curated mutations)MAP1LC3B
CIViC (Clinical Interpretations of Variants in Cancer)MAP1LC3B
Cancer3DMAP1LC3B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609604   
Orphanet
DisGeNETMAP1LC3B
MedgenMAP1LC3B
Genetic Testing Registry MAP1LC3B
NextProtQ9GZQ8 [Medical]
GENETestsMAP1LC3B
Target ValidationMAP1LC3B
Huge Navigator MAP1LC3B [HugePedia]
ClinGenMAP1LC3B
Clinical trials, drugs, therapy
MyCancerGenomeMAP1LC3B
Protein Interactions : CTDMAP1LC3B
Pharm GKB GenePA134923100
PharosQ9GZQ8
Clinical trialMAP1LC3B
Miscellaneous
canSAR (ICR)MAP1LC3B
HarmonizomeMAP1LC3B
DataMed IndexMAP1LC3B
Probes
Litterature
PubMed224 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMAP1LC3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:17:39 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.