Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MAP1LC3B2 (microtubule associated protein 1 light chain 3 beta 2)

Identity

Alias_symbol (synonym)ATG8G
Other alias
HGNC (Hugo) MAP1LC3B2
LocusID (NCBI) 643246
Atlas_Id 68791
Location 12q24.22  [Link to chromosome band 12q24]
Location_base_pair Starts at 116559381 and ends at 116576620 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAP1LC3B2   34390
Cards
Entrez_Gene (NCBI)MAP1LC3B2  643246  microtubule associated protein 1 light chain 3 beta 2
AliasesATG8G
GeneCards (Weizmann)MAP1LC3B2
Ensembl hg19 (Hinxton)ENSG00000258102 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258102 [Gene_View]  ENSG00000258102 [Sequence]  chr12:116559381-116576620 [Contig_View]  MAP1LC3B2 [Vega]
ICGC DataPortalENSG00000258102
TCGA cBioPortalMAP1LC3B2
AceView (NCBI)MAP1LC3B2
Genatlas (Paris)MAP1LC3B2
WikiGenes643246
SOURCE (Princeton)MAP1LC3B2
Genetics Home Reference (NIH)MAP1LC3B2
Genomic and cartography
GoldenPath hg38 (UCSC)MAP1LC3B2  -     chr12:116559381-116576620 +  12q24.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAP1LC3B2  -     12q24.22   [Description]    (hg19-Feb_2009)
GoldenPathMAP1LC3B2 - 12q24.22 [CytoView hg19]  MAP1LC3B2 - 12q24.22 [CytoView hg38]
ImmunoBaseENSG00000258102
Mapping of homologs : NCBIMAP1LC3B2 [Mapview hg19]  MAP1LC3B2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI540365 AI719464 DN994744
RefSeq transcript (Entrez)NM_001085481
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAP1LC3B2
Cluster EST : UnigeneHs.506947 [ NCBI ]
CGAP (NCI)Hs.506947
Alternative Splicing GalleryENSG00000258102
Gene ExpressionMAP1LC3B2 [ NCBI-GEO ]   MAP1LC3B2 [ EBI - ARRAY_EXPRESS ]   MAP1LC3B2 [ SEEK ]   MAP1LC3B2 [ MEM ]
Gene Expression Viewer (FireBrowse)MAP1LC3B2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643246
GTEX Portal (Tissue expression)MAP1LC3B2
Human Protein AtlasENSG00000258102-MAP1LC3B2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCE7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCE7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCE7
Splice isoforms : SwissVarA6NCE7
PhosPhoSitePlusA6NCE7
Domains : Interpro (EBI)Atg8-like    Ubiquitin-like_domsf   
Domain families : Pfam (Sanger)Atg8 (PF02991)   
Domain families : Pfam (NCBI)pfam02991   
Conserved Domain (NCBI)MAP1LC3B2
DMDM Disease mutations643246
Blocks (Seattle)MAP1LC3B2
SuperfamilyA6NCE7
Human Protein Atlas [tissue]ENSG00000258102-MAP1LC3B2 [tissue]
Peptide AtlasA6NCE7
IPIIPI00151462   
Protein Interaction databases
DIP (DOE-UCLA)A6NCE7
IntAct (EBI)A6NCE7
FunCoupENSG00000258102
BioGRIDMAP1LC3B2
STRING (EMBL)MAP1LC3B2
ZODIACMAP1LC3B2
Ontologies - Pathways
QuickGOA6NCE7
Ontology : AmiGOautophagosome assembly  autophagosome membrane  autophagy of mitochondrion  autophagosome  cytosol  microtubule  cellular response to nitrogen starvation  microtubule binding  endomembrane system  macroautophagy  cytoplasmic vesicle  ubiquitin protein ligase binding  autophagosome maturation  
Ontology : EGO-EBIautophagosome assembly  autophagosome membrane  autophagy of mitochondrion  autophagosome  cytosol  microtubule  cellular response to nitrogen starvation  microtubule binding  endomembrane system  macroautophagy  cytoplasmic vesicle  ubiquitin protein ligase binding  autophagosome maturation  
NDEx NetworkMAP1LC3B2
Atlas of Cancer Signalling NetworkMAP1LC3B2
Wikipedia pathwaysMAP1LC3B2
Orthology - Evolution
OrthoDB643246
GeneTree (enSembl)ENSG00000258102
Phylogenetic Trees/Animal Genes : TreeFamMAP1LC3B2
HOGENOMA6NCE7
Homologs : HomoloGeneMAP1LC3B2
Homology/Alignments : Family Browser (UCSC)MAP1LC3B2
Gene fusions - Rearrangements
Fusion : QuiverMAP1LC3B2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAP1LC3B2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAP1LC3B2
dbVarMAP1LC3B2
ClinVarMAP1LC3B2
1000_GenomesMAP1LC3B2 
Exome Variant ServerMAP1LC3B2
ExAC (Exome Aggregation Consortium)ENSG00000258102
GNOMAD BrowserENSG00000258102
Varsome BrowserMAP1LC3B2
Genetic variants : HAPMAP643246
Genomic Variants (DGV)MAP1LC3B2 [DGVbeta]
DECIPHERMAP1LC3B2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAP1LC3B2 
Mutations
ICGC Data PortalMAP1LC3B2 
TCGA Data PortalMAP1LC3B2 
Broad Tumor PortalMAP1LC3B2
OASIS PortalMAP1LC3B2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAP1LC3B2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMAP1LC3B2
Mutations and Diseases : HGMDMAP1LC3B2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAP1LC3B2
DgiDB (Drug Gene Interaction Database)MAP1LC3B2
DoCM (Curated mutations)MAP1LC3B2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAP1LC3B2 (select a term)
intoGenMAP1LC3B2
Cancer3DMAP1LC3B2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMAP1LC3B2
MedgenMAP1LC3B2
Genetic Testing Registry MAP1LC3B2
NextProtA6NCE7 [Medical]
TSGene643246
GENETestsMAP1LC3B2
Target ValidationMAP1LC3B2
Huge Navigator MAP1LC3B2 [HugePedia]
snp3D : Map Gene to Disease643246
BioCentury BCIQMAP1LC3B2
ClinGenMAP1LC3B2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643246
Chemical/Pharm GKB GenePA162394969
Clinical trialMAP1LC3B2
Miscellaneous
canSAR (ICR)MAP1LC3B2 (select the gene name)
DataMed IndexMAP1LC3B2
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAP1LC3B2
EVEXMAP1LC3B2
GoPubMedMAP1LC3B2
iHOPMAP1LC3B2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:51:40 CEST 2019

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