Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MAP1LC3C (microtubule associated protein 1 light chain 3 gamma)

Identity

Alias_symbol (synonym)ATG8J
Other aliasLC3C
HGNC (Hugo) MAP1LC3C
LocusID (NCBI) 440738
Atlas_Id 54959
Location 1q43  [Link to chromosome band 1q43]
Location_base_pair Starts at 242158792 and ends at 242162385 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAP1LC3C   13353
Cards
Entrez_Gene (NCBI)MAP1LC3C  440738  microtubule associated protein 1 light chain 3 gamma
AliasesATG8J; LC3C
GeneCards (Weizmann)MAP1LC3C
Ensembl hg19 (Hinxton)ENSG00000197769 [Gene_View]  chr1:242158792-242162385 [Contig_View]  MAP1LC3C [Vega]
Ensembl hg38 (Hinxton)ENSG00000197769 [Gene_View]  chr1:242158792-242162385 [Contig_View]  MAP1LC3C [Vega]
ICGC DataPortalENSG00000197769
TCGA cBioPortalMAP1LC3C
AceView (NCBI)MAP1LC3C
Genatlas (Paris)MAP1LC3C
WikiGenes440738
SOURCE (Princeton)MAP1LC3C
Genetics Home Reference (NIH)MAP1LC3C
Genomic and cartography
GoldenPath hg19 (UCSC)MAP1LC3C  -     chr1:242158792-242162385 -  1q43   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAP1LC3C  -     1q43   [Description]    (hg38-Dec_2013)
EnsemblMAP1LC3C - 1q43 [CytoView hg19]  MAP1LC3C - 1q43 [CytoView hg38]
Mapping of homologs : NCBIMAP1LC3C [Mapview hg19]  MAP1LC3C [Mapview hg38]
OMIM609605   
Gene and transcription
Genbank (Entrez)AF276659 BC127722 BC132986 BC132988 CN260933
RefSeq transcript (Entrez)NM_001004343
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)MAP1LC3C
Cluster EST : UnigeneHs.534971 [ NCBI ]
CGAP (NCI)Hs.534971
Alternative Splicing GalleryENSG00000197769
Gene ExpressionMAP1LC3C [ NCBI-GEO ]   MAP1LC3C [ EBI - ARRAY_EXPRESS ]   MAP1LC3C [ SEEK ]   MAP1LC3C [ MEM ]
Gene Expression Viewer (FireBrowse)MAP1LC3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440738
GTEX Portal (Tissue expression)MAP1LC3C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXW4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXW4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXW4
Splice isoforms : SwissVarQ9BXW4
PhosPhoSitePlusQ9BXW4
Domains : Interpro (EBI)Atg8-like    MAP1A/MAP1B_LC3C    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)Atg8 (PF02991)   
Domain families : Pfam (NCBI)pfam02991   
Conserved Domain (NCBI)MAP1LC3C
DMDM Disease mutations440738
Blocks (Seattle)MAP1LC3C
PDB (SRS)3VVW    3WAM    3WAP   
PDB (PDBSum)3VVW    3WAM    3WAP   
PDB (IMB)3VVW    3WAM    3WAP   
PDB (RSDB)3VVW    3WAM    3WAP   
Structural Biology KnowledgeBase3VVW    3WAM    3WAP   
SCOP (Structural Classification of Proteins)3VVW    3WAM    3WAP   
CATH (Classification of proteins structures)3VVW    3WAM    3WAP   
SuperfamilyQ9BXW4
Human Protein AtlasENSG00000197769
Peptide AtlasQ9BXW4
HPRD14226
IPIIPI00387017   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXW4
IntAct (EBI)Q9BXW4
FunCoupENSG00000197769
BioGRIDMAP1LC3C
STRING (EMBL)MAP1LC3C
ZODIACMAP1LC3C
Ontologies - Pathways
QuickGOQ9BXW4
Ontology : AmiGOautophagosome assembly  autophagosome membrane  autophagosome membrane  mitophagy  protein binding  autophagosome  cytosol  cytosol  microtubule  cellular response to nitrogen starvation  microtubule binding  endomembrane system  macroautophagy  organelle membrane  cytoplasmic vesicle  ubiquitin protein ligase binding  
Ontology : EGO-EBIautophagosome assembly  autophagosome membrane  autophagosome membrane  mitophagy  protein binding  autophagosome  cytosol  cytosol  microtubule  cellular response to nitrogen starvation  microtubule binding  endomembrane system  macroautophagy  organelle membrane  cytoplasmic vesicle  ubiquitin protein ligase binding  
NDEx NetworkMAP1LC3C
Atlas of Cancer Signalling NetworkMAP1LC3C
Wikipedia pathwaysMAP1LC3C
Orthology - Evolution
OrthoDB440738
GeneTree (enSembl)ENSG00000197769
Phylogenetic Trees/Animal Genes : TreeFamMAP1LC3C
HOVERGENQ9BXW4
HOGENOMQ9BXW4
Homologs : HomoloGeneMAP1LC3C
Homology/Alignments : Family Browser (UCSC)MAP1LC3C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAP1LC3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAP1LC3C
dbVarMAP1LC3C
ClinVarMAP1LC3C
1000_GenomesMAP1LC3C 
Exome Variant ServerMAP1LC3C
ExAC (Exome Aggregation Consortium)MAP1LC3C (select the gene name)
Genetic variants : HAPMAP440738
Genomic Variants (DGV)MAP1LC3C [DGVbeta]
DECIPHER (Syndromes)1:242158792-242162385  ENSG00000197769
CONAN: Copy Number AnalysisMAP1LC3C 
Mutations
ICGC Data PortalMAP1LC3C 
TCGA Data PortalMAP1LC3C 
Broad Tumor PortalMAP1LC3C
OASIS PortalMAP1LC3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAP1LC3C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAP1LC3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAP1LC3C
DgiDB (Drug Gene Interaction Database)MAP1LC3C
DoCM (Curated mutations)MAP1LC3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAP1LC3C (select a term)
intoGenMAP1LC3C
Cancer3DMAP1LC3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609605   
Orphanet
MedgenMAP1LC3C
Genetic Testing Registry MAP1LC3C
NextProtQ9BXW4 [Medical]
TSGene440738
GENETestsMAP1LC3C
Huge Navigator MAP1LC3C [HugePedia]
snp3D : Map Gene to Disease440738
BioCentury BCIQMAP1LC3C
ClinGenMAP1LC3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440738
Chemical/Pharm GKB GenePA142671482
Clinical trialMAP1LC3C
Miscellaneous
canSAR (ICR)MAP1LC3C (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAP1LC3C
EVEXMAP1LC3C
GoPubMedMAP1LC3C
iHOPMAP1LC3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:14:20 CET 2017

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