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MAP1S (microtubule associated protein 1S)

Identity

Alias_namesC19orf5
VCY2IP1
BPY2IP1
chromosome 19 open reading frame 5
VCY2 interacting protein 1
BPY2 interacting protein 1
Alias_symbol (synonym)FLJ10669
MAP8
Other aliasVCY2IP-1
HGNC (Hugo) MAP1S
LocusID (NCBI) 55201
Atlas_Id 68793
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17720156 and ends at 17734515 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LOC100507412 (-) / MAP1S (19p13.11)MB21D2 (3q29) / MAP1S (19p13.11)MPPED2 (11p14.1) / MAP1S (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAP1S   15715
Cards
Entrez_Gene (NCBI)MAP1S  55201  microtubule associated protein 1S
AliasesBPY2IP1; C19orf5; MAP8; VCY2IP-1; 
VCY2IP1
GeneCards (Weizmann)MAP1S
Ensembl hg19 (Hinxton)ENSG00000130479 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130479 [Gene_View]  chr19:17720156-17734515 [Contig_View]  MAP1S [Vega]
ICGC DataPortalENSG00000130479
TCGA cBioPortalMAP1S
AceView (NCBI)MAP1S
Genatlas (Paris)MAP1S
WikiGenes55201
SOURCE (Princeton)MAP1S
Genetics Home Reference (NIH)MAP1S
Genomic and cartography
GoldenPath hg38 (UCSC)MAP1S  -     chr19:17720156-17734515 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAP1S  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblMAP1S - 19p13.11 [CytoView hg19]  MAP1S - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIMAP1S [Mapview hg19]  MAP1S [Mapview hg38]
OMIM607573   
Gene and transcription
Genbank (Entrez)AA905204 AB062430 AJ440784 AK001531 AK023118
RefSeq transcript (Entrez)NM_001308363 NM_018174
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAP1S
Cluster EST : UnigeneHs.66048 [ NCBI ]
CGAP (NCI)Hs.66048
Alternative Splicing GalleryENSG00000130479
Gene ExpressionMAP1S [ NCBI-GEO ]   MAP1S [ EBI - ARRAY_EXPRESS ]   MAP1S [ SEEK ]   MAP1S [ MEM ]
Gene Expression Viewer (FireBrowse)MAP1S [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55201
GTEX Portal (Tissue expression)MAP1S
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ66K74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ66K74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ66K74
Splice isoforms : SwissVarQ66K74
PhosPhoSitePlusQ66K74
Domains : Interpro (EBI)MAP1    MAP1S    Metallo-B-lactamas   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MAP1S
DMDM Disease mutations55201
Blocks (Seattle)MAP1S
SuperfamilyQ66K74
Human Protein AtlasENSG00000130479
Peptide AtlasQ66K74
HPRD10461
IPIIPI00296485   IPI01014928   
Protein Interaction databases
DIP (DOE-UCLA)Q66K74
IntAct (EBI)Q66K74
FunCoupENSG00000130479
BioGRIDMAP1S
STRING (EMBL)MAP1S
ZODIACMAP1S
Ontologies - Pathways
QuickGOQ66K74
Ontology : AmiGOmicrotubule bundle formation  DNA binding  deoxyribonuclease activity  protein binding  nucleus  nucleolus  spindle  cytosol  microtubule  autophagy  apoptotic process  nervous system development  brain development  microtubule binding  microtubule binding  regulation of chromatin disassembly  tubulin binding  cell junction  dendrite  identical protein binding  cell projection  neuronal cell body  synapse  mitochondrion transport along microtubule  perinuclear region of cytoplasm  beta-tubulin binding  neuron projection morphogenesis  actin filament binding  actin filament binding  
Ontology : EGO-EBImicrotubule bundle formation  DNA binding  deoxyribonuclease activity  protein binding  nucleus  nucleolus  spindle  cytosol  microtubule  autophagy  apoptotic process  nervous system development  brain development  microtubule binding  microtubule binding  regulation of chromatin disassembly  tubulin binding  cell junction  dendrite  identical protein binding  cell projection  neuronal cell body  synapse  mitochondrion transport along microtubule  perinuclear region of cytoplasm  beta-tubulin binding  neuron projection morphogenesis  actin filament binding  actin filament binding  
NDEx NetworkMAP1S
Atlas of Cancer Signalling NetworkMAP1S
Wikipedia pathwaysMAP1S
Orthology - Evolution
OrthoDB55201
GeneTree (enSembl)ENSG00000130479
Phylogenetic Trees/Animal Genes : TreeFamMAP1S
HOVERGENQ66K74
HOGENOMQ66K74
Homologs : HomoloGeneMAP1S
Homology/Alignments : Family Browser (UCSC)MAP1S
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAP1S [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAP1S
dbVarMAP1S
ClinVarMAP1S
1000_GenomesMAP1S 
Exome Variant ServerMAP1S
ExAC (Exome Aggregation Consortium)MAP1S (select the gene name)
Genetic variants : HAPMAP55201
Genomic Variants (DGV)MAP1S [DGVbeta]
DECIPHERMAP1S [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAP1S 
Mutations
ICGC Data PortalMAP1S 
TCGA Data PortalMAP1S 
Broad Tumor PortalMAP1S
OASIS PortalMAP1S [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAP1S  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAP1S
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAP1S
DgiDB (Drug Gene Interaction Database)MAP1S
DoCM (Curated mutations)MAP1S (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAP1S (select a term)
intoGenMAP1S
Cancer3DMAP1S(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607573   
Orphanet
MedgenMAP1S
Genetic Testing Registry MAP1S
NextProtQ66K74 [Medical]
TSGene55201
GENETestsMAP1S
Huge Navigator MAP1S [HugePedia]
snp3D : Map Gene to Disease55201
BioCentury BCIQMAP1S
ClinGenMAP1S
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55201
Chemical/Pharm GKB GenePA38031
Clinical trialMAP1S
Miscellaneous
canSAR (ICR)MAP1S (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAP1S
EVEXMAP1S
GoPubMedMAP1S
iHOPMAP1S
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:37:50 CEST 2017

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