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MAP6 (microtubule associated protein 6)

Identity

Alias_symbol (synonym)KIAA1878
STOP
FLJ41346
MAP6-N
Other aliasMTAP6
N-STOP
HGNC (Hugo) MAP6
LocusID (NCBI) 4135
Atlas_Id 68796
Location 11q13.5  [Link to chromosome band 11q13]
Location_base_pair Starts at 75586918 and ends at 75668434 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
UVRAG (11q13.5) / MAP6 (11q13.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAP6   6868
Cards
Entrez_Gene (NCBI)MAP6  4135  microtubule associated protein 6
AliasesMAP6-N; MTAP6; N-STOP; STOP
GeneCards (Weizmann)MAP6
Ensembl hg19 (Hinxton)ENSG00000171533 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171533 [Gene_View]  chr11:75586918-75668434 [Contig_View]  MAP6 [Vega]
ICGC DataPortalENSG00000171533
TCGA cBioPortalMAP6
AceView (NCBI)MAP6
Genatlas (Paris)MAP6
WikiGenes4135
SOURCE (Princeton)MAP6
Genetics Home Reference (NIH)MAP6
Genomic and cartography
GoldenPath hg38 (UCSC)MAP6  -     chr11:75586918-75668434 -  11q13.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAP6  -     11q13.5   [Description]    (hg19-Feb_2009)
EnsemblMAP6 - 11q13.5 [CytoView hg19]  MAP6 - 11q13.5 [CytoView hg38]
Mapping of homologs : NCBIMAP6 [Mapview hg19]  MAP6 [Mapview hg38]
OMIM601783   
Gene and transcription
Genbank (Entrez)AB058781 AK054873 AK096511 AK123340 BC041411
RefSeq transcript (Entrez)NM_033063 NM_207577
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAP6
Cluster EST : UnigeneHs.585540 [ NCBI ]
CGAP (NCI)Hs.585540
Alternative Splicing GalleryENSG00000171533
Gene ExpressionMAP6 [ NCBI-GEO ]   MAP6 [ EBI - ARRAY_EXPRESS ]   MAP6 [ SEEK ]   MAP6 [ MEM ]
Gene Expression Viewer (FireBrowse)MAP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4135
GTEX Portal (Tissue expression)MAP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JE9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JE9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JE9
Splice isoforms : SwissVarQ96JE9
PhosPhoSitePlusQ96JE9
Domains : Interpro (EBI)MAP6   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MAP6
DMDM Disease mutations4135
Blocks (Seattle)MAP6
SuperfamilyQ96JE9
Human Protein AtlasENSG00000171533
Peptide AtlasQ96JE9
HPRD15989
IPIIPI00420071   IPI00306429   IPI00983487   
Protein Interaction databases
DIP (DOE-UCLA)Q96JE9
IntAct (EBI)Q96JE9
FunCoupENSG00000171533
BioGRIDMAP6
STRING (EMBL)MAP6
ZODIACMAP6
Ontologies - Pathways
QuickGOQ96JE9
Ontology : AmiGOmicrotubule cytoskeleton organization  protein binding  calmodulin binding  Golgi apparatus  microtubule  transport  microtubule binding  lysosome localization  perinuclear region of cytoplasm  dendrite morphogenesis  
Ontology : EGO-EBImicrotubule cytoskeleton organization  protein binding  calmodulin binding  Golgi apparatus  microtubule  transport  microtubule binding  lysosome localization  perinuclear region of cytoplasm  dendrite morphogenesis  
NDEx NetworkMAP6
Atlas of Cancer Signalling NetworkMAP6
Wikipedia pathwaysMAP6
Orthology - Evolution
OrthoDB4135
GeneTree (enSembl)ENSG00000171533
Phylogenetic Trees/Animal Genes : TreeFamMAP6
HOVERGENQ96JE9
HOGENOMQ96JE9
Homologs : HomoloGeneMAP6
Homology/Alignments : Family Browser (UCSC)MAP6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAP6
dbVarMAP6
ClinVarMAP6
1000_GenomesMAP6 
Exome Variant ServerMAP6
ExAC (Exome Aggregation Consortium)MAP6 (select the gene name)
Genetic variants : HAPMAP4135
Genomic Variants (DGV)MAP6 [DGVbeta]
DECIPHERMAP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAP6 
Mutations
ICGC Data PortalMAP6 
TCGA Data PortalMAP6 
Broad Tumor PortalMAP6
OASIS PortalMAP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAP6
DgiDB (Drug Gene Interaction Database)MAP6
DoCM (Curated mutations)MAP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAP6 (select a term)
intoGenMAP6
Cancer3DMAP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601783   
Orphanet
MedgenMAP6
Genetic Testing Registry MAP6
NextProtQ96JE9 [Medical]
TSGene4135
GENETestsMAP6
Target ValidationMAP6
Huge Navigator MAP6 [HugePedia]
snp3D : Map Gene to Disease4135
BioCentury BCIQMAP6
ClinGenMAP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4135
Chemical/Pharm GKB GenePA30614
Clinical trialMAP6
Miscellaneous
canSAR (ICR)MAP6 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAP6
EVEXMAP6
GoPubMedMAP6
iHOPMAP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:56 CEST 2017

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