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MAP6D1 (MAP6 domain containing 1)

Identity

Alias_symbol (synonym)FLJ12748
SL21
Other aliasMAPO6D1
HGNC (Hugo) MAP6D1
LocusID (NCBI) 79929
Atlas_Id 68797
Location 3q27.1  [Link to chromosome band 3q27]
Location_base_pair Starts at 183533664 and ends at 183543393 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MAGI2 (7q21.11) / MAP6D1 (3q27.1)PARL (3q27.1) / MAP6D1 (3q27.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAP6D1   25753
Cards
Entrez_Gene (NCBI)MAP6D1  79929  MAP6 domain containing 1
AliasesMAPO6D1; SL21
GeneCards (Weizmann)MAP6D1
Ensembl hg19 (Hinxton)ENSG00000180834 [Gene_View]  chr3:183533664-183543393 [Contig_View]  MAP6D1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180834 [Gene_View]  chr3:183533664-183543393 [Contig_View]  MAP6D1 [Vega]
ICGC DataPortalENSG00000180834
TCGA cBioPortalMAP6D1
AceView (NCBI)MAP6D1
Genatlas (Paris)MAP6D1
WikiGenes79929
SOURCE (Princeton)MAP6D1
Genetics Home Reference (NIH)MAP6D1
Genomic and cartography
GoldenPath hg19 (UCSC)MAP6D1  -     chr3:183533664-183543393 -  3q27.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAP6D1  -     3q27.1   [Description]    (hg38-Dec_2013)
EnsemblMAP6D1 - 3q27.1 [CytoView hg19]  MAP6D1 - 3q27.1 [CytoView hg38]
Mapping of homologs : NCBIMAP6D1 [Mapview hg19]  MAP6D1 [Mapview hg38]
OMIM610593   
Gene and transcription
Genbank (Entrez)AA890498 AK022810 BC006434 BI669125
RefSeq transcript (Entrez)NM_024871
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)MAP6D1
Cluster EST : UnigeneHs.478465 [ NCBI ]
CGAP (NCI)Hs.478465
Alternative Splicing GalleryENSG00000180834
Gene ExpressionMAP6D1 [ NCBI-GEO ]   MAP6D1 [ EBI - ARRAY_EXPRESS ]   MAP6D1 [ SEEK ]   MAP6D1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAP6D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79929
GTEX Portal (Tissue expression)MAP6D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9H5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9H5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9H5
Splice isoforms : SwissVarQ9H9H5
PhosPhoSitePlusQ9H9H5
Domains : Interpro (EBI)MAP6    MAP6/FAM154   
Domain families : Pfam (Sanger)STOP (PF05217)   
Domain families : Pfam (NCBI)pfam05217   
Conserved Domain (NCBI)MAP6D1
DMDM Disease mutations79929
Blocks (Seattle)MAP6D1
SuperfamilyQ9H9H5
Human Protein AtlasENSG00000180834
Peptide AtlasQ9H9H5
HPRD07793
IPIIPI00016385   IPI00926663   IPI00926897   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9H5
IntAct (EBI)Q9H9H5
FunCoupENSG00000180834
BioGRIDMAP6D1
STRING (EMBL)MAP6D1
ZODIACMAP6D1
Ontologies - Pathways
QuickGOQ9H9H5
Ontology : AmiGOmicrotubule cytoskeleton organization  calmodulin binding  Golgi-associated vesicle  cis-Golgi network  microtubule  negative regulation of microtubule depolymerization  microtubule binding  N-terminal peptidyl-L-cysteine N-palmitoylation  
Ontology : EGO-EBImicrotubule cytoskeleton organization  calmodulin binding  Golgi-associated vesicle  cis-Golgi network  microtubule  negative regulation of microtubule depolymerization  microtubule binding  N-terminal peptidyl-L-cysteine N-palmitoylation  
NDEx NetworkMAP6D1
Atlas of Cancer Signalling NetworkMAP6D1
Wikipedia pathwaysMAP6D1
Orthology - Evolution
OrthoDB79929
GeneTree (enSembl)ENSG00000180834
Phylogenetic Trees/Animal Genes : TreeFamMAP6D1
HOVERGENQ9H9H5
HOGENOMQ9H9H5
Homologs : HomoloGeneMAP6D1
Homology/Alignments : Family Browser (UCSC)MAP6D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAP6D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAP6D1
dbVarMAP6D1
ClinVarMAP6D1
1000_GenomesMAP6D1 
Exome Variant ServerMAP6D1
ExAC (Exome Aggregation Consortium)MAP6D1 (select the gene name)
Genetic variants : HAPMAP79929
Genomic Variants (DGV)MAP6D1 [DGVbeta]
DECIPHER (Syndromes)3:183533664-183543393  ENSG00000180834
CONAN: Copy Number AnalysisMAP6D1 
Mutations
ICGC Data PortalMAP6D1 
TCGA Data PortalMAP6D1 
Broad Tumor PortalMAP6D1
OASIS PortalMAP6D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAP6D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAP6D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAP6D1
DgiDB (Drug Gene Interaction Database)MAP6D1
DoCM (Curated mutations)MAP6D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAP6D1 (select a term)
intoGenMAP6D1
Cancer3DMAP6D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610593   
Orphanet
MedgenMAP6D1
Genetic Testing Registry MAP6D1
NextProtQ9H9H5 [Medical]
TSGene79929
GENETestsMAP6D1
Huge Navigator MAP6D1 [HugePedia]
snp3D : Map Gene to Disease79929
BioCentury BCIQMAP6D1
ClinGenMAP6D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79929
Chemical/Pharm GKB GenePA142671480
Clinical trialMAP6D1
Miscellaneous
canSAR (ICR)MAP6D1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAP6D1
EVEXMAP6D1
GoPubMedMAP6D1
iHOPMAP6D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:41 CET 2017

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