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MAP7D1 (MAP7 domain containing 1)

Identity

Alias_namesPARCC1
RPRC1
proline arginine rich coiled coil 1
arginine/proline rich coiled-coil 1
Alias_symbol (synonym)FLJ10350
FLJ39022
Other alias
HGNC (Hugo) MAP7D1
LocusID (NCBI) 55700
Atlas_Id 68798
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 36155965 and ends at 36180849 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COMT (22q11.21) / MAP7D1 (1p34.3)MAP7D1 (1p34.3) / RINL (19q13.2)MAP7D1 (1p34.3) / TXNRD1 (12q23.3)
MIDN (19p13.3) / MAP7D1 (1p34.3)PRR15 (7p14.3) / MAP7D1 (1p34.3)THRAP3 (1p34.3) / MAP7D1 (1p34.3)
THRAP3 MAP7D1MIDN MAP7D1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAP7D1   25514
Cards
Entrez_Gene (NCBI)MAP7D1  55700  MAP7 domain containing 1
AliasesPARCC1; RPRC1
GeneCards (Weizmann)MAP7D1
Ensembl hg19 (Hinxton)ENSG00000116871 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116871 [Gene_View]  chr1:36155965-36180849 [Contig_View]  MAP7D1 [Vega]
ICGC DataPortalENSG00000116871
TCGA cBioPortalMAP7D1
AceView (NCBI)MAP7D1
Genatlas (Paris)MAP7D1
WikiGenes55700
SOURCE (Princeton)MAP7D1
Genetics Home Reference (NIH)MAP7D1
Genomic and cartography
GoldenPath hg38 (UCSC)MAP7D1  -     chr1:36155965-36180849 +  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAP7D1  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblMAP7D1 - 1p34.3 [CytoView hg19]  MAP7D1 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIMAP7D1 [Mapview hg19]  MAP7D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB033013 AF064852 AF218002 AK001212 AK095939
RefSeq transcript (Entrez)NM_001286365 NM_001286366 NM_018067
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAP7D1
Cluster EST : UnigeneHs.356096 [ NCBI ]
CGAP (NCI)Hs.356096
Alternative Splicing GalleryENSG00000116871
Gene ExpressionMAP7D1 [ NCBI-GEO ]   MAP7D1 [ EBI - ARRAY_EXPRESS ]   MAP7D1 [ SEEK ]   MAP7D1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAP7D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55700
GTEX Portal (Tissue expression)MAP7D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KQU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KQU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KQU3
Splice isoforms : SwissVarQ3KQU3
PhosPhoSitePlusQ3KQU3
Domains : Interpro (EBI)MAP7_fam   
Domain families : Pfam (Sanger)MAP7 (PF05672)   
Domain families : Pfam (NCBI)pfam05672   
Conserved Domain (NCBI)MAP7D1
DMDM Disease mutations55700
Blocks (Seattle)MAP7D1
SuperfamilyQ3KQU3
Human Protein AtlasENSG00000116871
Peptide AtlasQ3KQU3
HPRD07666
IPIIPI00654605   IPI00645814   IPI00167009   IPI00867630   IPI00827687   IPI00030012   IPI00978097   IPI01010621   
Protein Interaction databases
DIP (DOE-UCLA)Q3KQU3
IntAct (EBI)Q3KQU3
FunCoupENSG00000116871
BioGRIDMAP7D1
STRING (EMBL)MAP7D1
ZODIACMAP7D1
Ontologies - Pathways
QuickGOQ3KQU3
Ontology : AmiGOmicrotubule cytoskeleton organization  structural molecule activity  spindle  cytosol  microtubule cytoskeleton  microtubule cytoskeleton  
Ontology : EGO-EBImicrotubule cytoskeleton organization  structural molecule activity  spindle  cytosol  microtubule cytoskeleton  microtubule cytoskeleton  
NDEx NetworkMAP7D1
Atlas of Cancer Signalling NetworkMAP7D1
Wikipedia pathwaysMAP7D1
Orthology - Evolution
OrthoDB55700
GeneTree (enSembl)ENSG00000116871
Phylogenetic Trees/Animal Genes : TreeFamMAP7D1
HOVERGENQ3KQU3
HOGENOMQ3KQU3
Homologs : HomoloGeneMAP7D1
Homology/Alignments : Family Browser (UCSC)MAP7D1
Gene fusions - Rearrangements
Fusion: TCGATHRAP3 MAP7D1
Fusion: TCGAMIDN MAP7D1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAP7D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAP7D1
dbVarMAP7D1
ClinVarMAP7D1
1000_GenomesMAP7D1 
Exome Variant ServerMAP7D1
ExAC (Exome Aggregation Consortium)MAP7D1 (select the gene name)
Genetic variants : HAPMAP55700
Genomic Variants (DGV)MAP7D1 [DGVbeta]
DECIPHERMAP7D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAP7D1 
Mutations
ICGC Data PortalMAP7D1 
TCGA Data PortalMAP7D1 
Broad Tumor PortalMAP7D1
OASIS PortalMAP7D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAP7D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAP7D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAP7D1
DgiDB (Drug Gene Interaction Database)MAP7D1
DoCM (Curated mutations)MAP7D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAP7D1 (select a term)
intoGenMAP7D1
Cancer3DMAP7D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMAP7D1
Genetic Testing Registry MAP7D1
NextProtQ3KQU3 [Medical]
TSGene55700
GENETestsMAP7D1
Target ValidationMAP7D1
Huge Navigator MAP7D1 [HugePedia]
snp3D : Map Gene to Disease55700
BioCentury BCIQMAP7D1
ClinGenMAP7D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55700
Chemical/Pharm GKB GenePA162394970
Clinical trialMAP7D1
Miscellaneous
canSAR (ICR)MAP7D1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAP7D1
EVEXMAP7D1
GoPubMedMAP7D1
iHOPMAP7D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:56 CEST 2017

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