Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MAP7D2 (MAP7 domain containing 2)

Identity

Alias (NCBI)-
HGNC (Hugo) MAP7D2
HGNC Alias symbFLJ14503
LocusID (NCBI) 256714
Atlas_Id 68799
Location Xp22.12  [Link to chromosome band Xp22]
Location_base_pair Starts at 20006713 and ends at 20116996 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MAP7D2 (Xp22.12) / SDC3 (1p35.2)SCML2 (Xp22.13) / MAP7D2 (Xp22.12)SH3KBP1 (Xp22.12) / MAP7D2 (Xp22.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  SCML2/MAP7D2 (Xp22)
SH3KBP1/MAP7D2 (Xp22)

External links

Nomenclature
HGNC (Hugo)MAP7D2   25899
Cards
Entrez_Gene (NCBI)MAP7D2    MAP7 domain containing 2
Aliases
GeneCards (Weizmann)MAP7D2
Ensembl hg19 (Hinxton)ENSG00000184368 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184368 [Gene_View]  ENSG00000184368 [Sequence]  chrX:20006713-20116996 [Contig_View]  MAP7D2 [Vega]
ICGC DataPortalENSG00000184368
TCGA cBioPortalMAP7D2
AceView (NCBI)MAP7D2
Genatlas (Paris)MAP7D2
SOURCE (Princeton)MAP7D2
Genetics Home Reference (NIH)MAP7D2
Genomic and cartography
GoldenPath hg38 (UCSC)MAP7D2  -     chrX:20006713-20116996 -  Xp22.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAP7D2  -     Xp22.12   [Description]    (hg19-Feb_2009)
GoldenPathMAP7D2 - Xp22.12 [CytoView hg19]  MAP7D2 - Xp22.12 [CytoView hg38]
ImmunoBaseENSG00000184368
genome Data Viewer NCBIMAP7D2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK027409 AK098768 AK127056 AK294788 AK296319
RefSeq transcript (Entrez)NM_001168465 NM_001168466 NM_001168467 NM_152780
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAP7D2
Alternative Splicing GalleryENSG00000184368
Gene ExpressionMAP7D2 [ NCBI-GEO ]   MAP7D2 [ EBI - ARRAY_EXPRESS ]   MAP7D2 [ SEEK ]   MAP7D2 [ MEM ]
Gene Expression Viewer (FireBrowse)MAP7D2 [ Firebrowse - Broad ]
GenevisibleExpression of MAP7D2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256714
GTEX Portal (Tissue expression)MAP7D2
Human Protein AtlasENSG00000184368-MAP7D2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96T17   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96T17  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96T17
Splice isoforms : SwissVarQ96T17
PhosPhoSitePlusQ96T17
Domains : Interpro (EBI)MAP7_fam   
Domain families : Pfam (Sanger)MAP7 (PF05672)   
Domain families : Pfam (NCBI)pfam05672   
Conserved Domain (NCBI)MAP7D2
Blocks (Seattle)MAP7D2
SuperfamilyQ96T17
Human Protein Atlas [tissue]ENSG00000184368-MAP7D2 [tissue]
Peptide AtlasQ96T17
HPRD06525
IPIIPI00844217   IPI00554579   IPI00167142   IPI01018798   IPI00922189   IPI01012127   IPI01025508   IPI00922426   IPI00942170   
Protein Interaction databases
DIP (DOE-UCLA)Q96T17
IntAct (EBI)Q96T17
BioGRIDMAP7D2
STRING (EMBL)MAP7D2
ZODIACMAP7D2
Ontologies - Pathways
QuickGOQ96T17
Ontology : AmiGOmicrotubule cytoskeleton organization  microtubule cytoskeleton  
Ontology : EGO-EBImicrotubule cytoskeleton organization  microtubule cytoskeleton  
NDEx NetworkMAP7D2
Atlas of Cancer Signalling NetworkMAP7D2
Wikipedia pathwaysMAP7D2
Orthology - Evolution
OrthoDB256714
GeneTree (enSembl)ENSG00000184368
Phylogenetic Trees/Animal Genes : TreeFamMAP7D2
HOGENOMQ96T17
Homologs : HomoloGeneMAP7D2
Homology/Alignments : Family Browser (UCSC)MAP7D2
Gene fusions - Rearrangements
Fusion : QuiverMAP7D2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAP7D2 [hg38]
dbVarMAP7D2
ClinVarMAP7D2
MonarchMAP7D2
1000_GenomesMAP7D2 
Exome Variant ServerMAP7D2
GNOMAD BrowserENSG00000184368
Varsome BrowserMAP7D2
Genomic Variants (DGV)MAP7D2 [DGVbeta]
DECIPHERMAP7D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAP7D2 
Mutations
ICGC Data PortalMAP7D2 
TCGA Data PortalMAP7D2 
Broad Tumor PortalMAP7D2
OASIS PortalMAP7D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAP7D2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMAP7D2
Mutations and Diseases : HGMDMAP7D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAP7D2
DgiDB (Drug Gene Interaction Database)MAP7D2
DoCM (Curated mutations)MAP7D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAP7D2 (select a term)
intoGenMAP7D2
Cancer3DMAP7D2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMAP7D2
MedgenMAP7D2
Genetic Testing Registry MAP7D2
NextProtQ96T17 [Medical]
GENETestsMAP7D2
Target ValidationMAP7D2
Huge Navigator MAP7D2 [HugePedia]
ClinGenMAP7D2
Clinical trials, drugs, therapy
MyCancerGenomeMAP7D2
Protein Interactions : CTD
Pharm GKB GenePA162394971
Clinical trialMAP7D2
Miscellaneous
canSAR (ICR)MAP7D2 (select the gene name)
HarmonizomeMAP7D2
DataMed IndexMAP7D2
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAP7D2
EVEXMAP7D2
GoPubMedMAP7D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:12:45 CET 2020
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