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MAP7D3 (MAP7 domain containing 3)

Identity

Alias_symbol (synonym)FLJ12649
Other aliasMDP3
HGNC (Hugo) MAP7D3
LocusID (NCBI) 79649
Atlas_Id 55197
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 136216816 and ends at 136256482 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATOX1 (5q33.1) / MAP7D3 (Xq26.3)MAP7D3 (Xq26.3) / MAP7D3 (Xq26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAP7D3   25742
Cards
Entrez_Gene (NCBI)MAP7D3  79649  MAP7 domain containing 3
AliasesMDP3
GeneCards (Weizmann)MAP7D3
Ensembl hg19 (Hinxton)ENSG00000129680 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129680 [Gene_View]  chrX:136216816-136256482 [Contig_View]  MAP7D3 [Vega]
ICGC DataPortalENSG00000129680
TCGA cBioPortalMAP7D3
AceView (NCBI)MAP7D3
Genatlas (Paris)MAP7D3
WikiGenes79649
SOURCE (Princeton)MAP7D3
Genetics Home Reference (NIH)MAP7D3
Genomic and cartography
GoldenPath hg38 (UCSC)MAP7D3  -     chrX:136216816-136256482 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAP7D3  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblMAP7D3 - Xq26.3 [CytoView hg19]  MAP7D3 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIMAP7D3 [Mapview hg19]  MAP7D3 [Mapview hg38]
OMIM300930   
Gene and transcription
Genbank (Entrez)AK022463 AK022711 AK301478 AL832120 AL832475
RefSeq transcript (Entrez)NM_001173516 NM_001173517 NM_024597 NM_024765
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAP7D3
Cluster EST : UnigeneHs.446275 [ NCBI ]
CGAP (NCI)Hs.446275
Alternative Splicing GalleryENSG00000129680
Gene ExpressionMAP7D3 [ NCBI-GEO ]   MAP7D3 [ EBI - ARRAY_EXPRESS ]   MAP7D3 [ SEEK ]   MAP7D3 [ MEM ]
Gene Expression Viewer (FireBrowse)MAP7D3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79649
GTEX Portal (Tissue expression)MAP7D3
Human Protein AtlasENSG00000129680-MAP7D3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWC1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWC1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWC1
Splice isoforms : SwissVarQ8IWC1
PhosPhoSitePlusQ8IWC1
Domains : Interpro (EBI)MAP7_fam   
Domain families : Pfam (Sanger)MAP7 (PF05672)   
Domain families : Pfam (NCBI)pfam05672   
Conserved Domain (NCBI)MAP7D3
DMDM Disease mutations79649
Blocks (Seattle)MAP7D3
SuperfamilyQ8IWC1
Human Protein Atlas [tissue]ENSG00000129680-MAP7D3 [tissue]
Peptide AtlasQ8IWC1
IPIIPI00847637   IPI00786887   IPI00217264   IPI00386897   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWC1
IntAct (EBI)Q8IWC1
FunCoupENSG00000129680
BioGRIDMAP7D3
STRING (EMBL)MAP7D3
ZODIACMAP7D3
Ontologies - Pathways
QuickGOQ8IWC1
Ontology : AmiGOmicrotubule cytoskeleton organization  structural molecule activity  cytoplasm  spindle  microtubule binding  microtubule cytoskeleton  tubulin binding  membrane  microtubule polymerization  
Ontology : EGO-EBImicrotubule cytoskeleton organization  structural molecule activity  cytoplasm  spindle  microtubule binding  microtubule cytoskeleton  tubulin binding  membrane  microtubule polymerization  
NDEx NetworkMAP7D3
Atlas of Cancer Signalling NetworkMAP7D3
Wikipedia pathwaysMAP7D3
Orthology - Evolution
OrthoDB79649
GeneTree (enSembl)ENSG00000129680
Phylogenetic Trees/Animal Genes : TreeFamMAP7D3
HOVERGENQ8IWC1
HOGENOMQ8IWC1
Homologs : HomoloGeneMAP7D3
Homology/Alignments : Family Browser (UCSC)MAP7D3
Gene fusions - Rearrangements
Tumor Fusion PortalMAP7D3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAP7D3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAP7D3
dbVarMAP7D3
ClinVarMAP7D3
1000_GenomesMAP7D3 
Exome Variant ServerMAP7D3
ExAC (Exome Aggregation Consortium)ENSG00000129680
GNOMAD BrowserENSG00000129680
Genetic variants : HAPMAP79649
Genomic Variants (DGV)MAP7D3 [DGVbeta]
DECIPHERMAP7D3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAP7D3 
Mutations
ICGC Data PortalMAP7D3 
TCGA Data PortalMAP7D3 
Broad Tumor PortalMAP7D3
OASIS PortalMAP7D3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAP7D3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAP7D3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAP7D3
DgiDB (Drug Gene Interaction Database)MAP7D3
DoCM (Curated mutations)MAP7D3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAP7D3 (select a term)
intoGenMAP7D3
Cancer3DMAP7D3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300930   
Orphanet
DisGeNETMAP7D3
MedgenMAP7D3
Genetic Testing Registry MAP7D3
NextProtQ8IWC1 [Medical]
TSGene79649
GENETestsMAP7D3
Target ValidationMAP7D3
Huge Navigator MAP7D3 [HugePedia]
snp3D : Map Gene to Disease79649
BioCentury BCIQMAP7D3
ClinGenMAP7D3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79649
Chemical/Pharm GKB GenePA162394972
Clinical trialMAP7D3
Miscellaneous
canSAR (ICR)MAP7D3 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAP7D3
EVEXMAP7D3
GoPubMedMAP7D3
iHOPMAP7D3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:21:37 CET 2017

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