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MAPKAPK5-AS1 (MAPKAPK5 antisense RNA 1)

Identity

Alias_namesC12orf47
chromosome 12 open reading frame 47
MAPKAPK5 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)FLJ39616
Other alias
HGNC (Hugo) MAPKAPK5-AS1
LocusID (NCBI) 51275
Atlas_Id 78167
Location 12q24.12  [Link to chromosome band 12q24]
Location_base_pair Starts at 111839774 and ends at 111841407 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAPKAPK5-AS1   24091
Cards
Entrez_Gene (NCBI)MAPKAPK5-AS1  51275  MAPKAPK5 antisense RNA 1
AliasesC12orf47
GeneCards (Weizmann)MAPKAPK5-AS1
Ensembl hg19 (Hinxton)ENSG00000234608 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234608 [Gene_View]  chr12:111839774-111841407 [Contig_View]  MAPKAPK5-AS1 [Vega]
ICGC DataPortalENSG00000234608
TCGA cBioPortalMAPKAPK5-AS1
AceView (NCBI)MAPKAPK5-AS1
Genatlas (Paris)MAPKAPK5-AS1
WikiGenes51275
SOURCE (Princeton)MAPKAPK5-AS1
Genetics Home Reference (NIH)MAPKAPK5-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)MAPKAPK5-AS1  -     chr12:111839774-111841407 -  12q24.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAPKAPK5-AS1  -     12q24.12   [Description]    (hg19-Feb_2009)
EnsemblMAPKAPK5-AS1 - 12q24.12 [CytoView hg19]  MAPKAPK5-AS1 - 12q24.12 [CytoView hg38]
Mapping of homologs : NCBIMAPKAPK5-AS1 [Mapview hg19]  MAPKAPK5-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF229831 AK096935 AK124158 BC007973 BC015633
RefSeq transcript (Entrez)NM_016534
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAPKAPK5-AS1
Cluster EST : UnigeneHs.333120 [ NCBI ]
CGAP (NCI)Hs.333120
Alternative Splicing GalleryENSG00000234608
Gene ExpressionMAPKAPK5-AS1 [ NCBI-GEO ]   MAPKAPK5-AS1 [ EBI - ARRAY_EXPRESS ]   MAPKAPK5-AS1 [ SEEK ]   MAPKAPK5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAPKAPK5-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51275
GTEX Portal (Tissue expression)MAPKAPK5-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8E1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8E1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8E1
Splice isoforms : SwissVarQ8N8E1
PhosPhoSitePlusQ8N8E1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MAPKAPK5-AS1
DMDM Disease mutations51275
Blocks (Seattle)MAPKAPK5-AS1
SuperfamilyQ8N8E1
Human Protein AtlasENSG00000234608
Peptide AtlasQ8N8E1
HPRD16946
IPIIPI00167454   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8E1
IntAct (EBI)Q8N8E1
FunCoupENSG00000234608
BioGRIDMAPKAPK5-AS1
STRING (EMBL)MAPKAPK5-AS1
ZODIACMAPKAPK5-AS1
Ontologies - Pathways
QuickGOQ8N8E1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMAPKAPK5-AS1
Atlas of Cancer Signalling NetworkMAPKAPK5-AS1
Wikipedia pathwaysMAPKAPK5-AS1
Orthology - Evolution
OrthoDB51275
GeneTree (enSembl)ENSG00000234608
Phylogenetic Trees/Animal Genes : TreeFamMAPKAPK5-AS1
HOVERGENQ8N8E1
HOGENOMQ8N8E1
Homologs : HomoloGeneMAPKAPK5-AS1
Homology/Alignments : Family Browser (UCSC)MAPKAPK5-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAPKAPK5-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAPKAPK5-AS1
dbVarMAPKAPK5-AS1
ClinVarMAPKAPK5-AS1
1000_GenomesMAPKAPK5-AS1 
Exome Variant ServerMAPKAPK5-AS1
ExAC (Exome Aggregation Consortium)MAPKAPK5-AS1 (select the gene name)
Genetic variants : HAPMAP51275
Genomic Variants (DGV)MAPKAPK5-AS1 [DGVbeta]
DECIPHERMAPKAPK5-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAPKAPK5-AS1 
Mutations
ICGC Data PortalMAPKAPK5-AS1 
TCGA Data PortalMAPKAPK5-AS1 
Broad Tumor PortalMAPKAPK5-AS1
OASIS PortalMAPKAPK5-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMAPKAPK5-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAPKAPK5-AS1
DgiDB (Drug Gene Interaction Database)MAPKAPK5-AS1
DoCM (Curated mutations)MAPKAPK5-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAPKAPK5-AS1 (select a term)
intoGenMAPKAPK5-AS1
Cancer3DMAPKAPK5-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMAPKAPK5-AS1
Genetic Testing Registry MAPKAPK5-AS1
NextProtQ8N8E1 [Medical]
TSGene51275
GENETestsMAPKAPK5-AS1
Target ValidationMAPKAPK5-AS1
Huge Navigator MAPKAPK5-AS1 [HugePedia]
snp3D : Map Gene to Disease51275
BioCentury BCIQMAPKAPK5-AS1
ClinGenMAPKAPK5-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51275
Chemical/Pharm GKB GenePA143485377
Clinical trialMAPKAPK5-AS1
Miscellaneous
canSAR (ICR)MAPKAPK5-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAPKAPK5-AS1
EVEXMAPKAPK5-AS1
GoPubMedMAPKAPK5-AS1
iHOPMAPKAPK5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:56 CEST 2017

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