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MAPRE3 (microtubule associated protein RP/EB family member 3)

Identity

Other namesEB3
EBF3
EBF3-S
RP3
HGNC (Hugo) MAPRE3
LocusID (NCBI) 22924
Atlas_Id 41298
Location 2p23.3
Location_base_pair Starts at 27237622 and ends at 27250087 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EPB41L3 (18p11.31) / MAPRE3 (2p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAPRE3   6892
Cards
Entrez_Gene (NCBI)MAPRE3  22924  microtubule associated protein RP/EB family member 3
GeneCards (Weizmann)MAPRE3
Ensembl hg19 (Hinxton)ENSG00000084764 [Gene_View]  chr2:27237622-27250087 [Contig_View]  MAPRE3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000084764 [Gene_View]  chr2:27237622-27250087 [Contig_View]  MAPRE3 [Vega]
ICGC DataPortalENSG00000084764
TCGA cBioPortalMAPRE3
AceView (NCBI)MAPRE3
Genatlas (Paris)MAPRE3
WikiGenes22924
SOURCE (Princeton)MAPRE3
Genomic and cartography
GoldenPath hg19 (UCSC)MAPRE3  -     chr2:27237622-27250087 +  2p23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAPRE3  -     2p23.3   [Description]    (hg38-Dec_2013)
EnsemblMAPRE3 - 2p23.3 [CytoView hg19]  MAPRE3 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIMAPRE3 [Mapview hg19]  MAPRE3 [Mapview hg38]
OMIM605788   
Gene and transcription
Genbank (Entrez)AB025186 AK302950 AK312342 BC011557 BM560331
RefSeq transcript (Entrez)NM_001303050 NM_012326
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)MAPRE3
Cluster EST : UnigeneHs.515860 [ NCBI ]
CGAP (NCI)Hs.515860
Alternative Splicing : Fast-db (Paris)GSHG0016320
Alternative Splicing GalleryENSG00000084764
Gene ExpressionMAPRE3 [ NCBI-GEO ]   MAPRE3 [ EBI - ARRAY_EXPRESS ]   MAPRE3 [ SEEK ]   MAPRE3 [ MEM ]
Gene Expression Viewer (FireBrowse)MAPRE3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)22924
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPY8 (Uniprot)
NextProtQ9UPY8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPY8
Splice isoforms : SwissVarQ9UPY8 (Swissvar)
PhosPhoSitePlusQ9UPY8
Domaine pattern : Prosite (Expaxy)CH (PS50021)    EB1_C (PS51230)   
Domains : Interpro (EBI)CH-domain    EB1_C    EB3_vertebrate    MAPRE   
Domain families : Pfam (Sanger)CH (PF00307)    EB1 (PF03271)   
Domain families : Pfam (NCBI)pfam00307    pfam03271   
DMDM Disease mutations22924
Blocks (Seattle)MAPRE3
PDB (SRS)1WYO    3CO1    3JAK    3JAL    3JAR    3TQ7   
PDB (PDBSum)1WYO    3CO1    3JAK    3JAL    3JAR    3TQ7   
PDB (IMB)1WYO    3CO1    3JAK    3JAL    3JAR    3TQ7   
PDB (RSDB)1WYO    3CO1    3JAK    3JAL    3JAR    3TQ7   
Structural Biology KnowledgeBase1WYO    3CO1    3JAK    3JAL    3JAR    3TQ7   
SCOP (Structural Classification of Proteins)1WYO    3CO1    3JAK    3JAL    3JAR    3TQ7   
CATH (Classification of proteins structures)1WYO    3CO1    3JAK    3JAL    3JAR    3TQ7   
SuperfamilyQ9UPY8
Human Protein AtlasENSG00000084764
Peptide AtlasQ9UPY8
HPRD16156
IPIIPI00017597   IPI00553216   IPI00892961   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPY8
IntAct (EBI)Q9UPY8
FunCoupENSG00000084764
BioGRIDMAPRE3
STRING (EMBL)MAPRE3
ZODIACMAPRE3
Ontologies - Pathways
QuickGOQ9UPY8
Ontology : AmiGOprotein binding  cytoplasm  cytoplasm  cytoplasmic microtubule  mitotic nuclear division  microtubule binding  microtubule cytoskeleton  midbody  microtubule plus-end  positive regulation of cyclin-dependent protein serine/threonine kinase activity  positive regulation of transcription, DNA-templated  perinuclear region of cytoplasm  cell division  positive regulation of microtubule plus-end binding  
Ontology : EGO-EBIprotein binding  cytoplasm  cytoplasm  cytoplasmic microtubule  mitotic nuclear division  microtubule binding  microtubule cytoskeleton  midbody  microtubule plus-end  positive regulation of cyclin-dependent protein serine/threonine kinase activity  positive regulation of transcription, DNA-templated  perinuclear region of cytoplasm  cell division  positive regulation of microtubule plus-end binding  
NDEx Network
Atlas of Cancer Signalling NetworkMAPRE3
Wikipedia pathwaysMAPRE3
Orthology - Evolution
OrthoDB22924
GeneTree (enSembl)ENSG00000084764
Phylogenetic Trees/Animal Genes : TreeFamMAPRE3
Homologs : HomoloGeneMAPRE3
Homology/Alignments : Family Browser (UCSC)MAPRE3
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerMAPRE3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAPRE3
dbVarMAPRE3
ClinVarMAPRE3
1000_GenomesMAPRE3 
Exome Variant ServerMAPRE3
ExAC (Exome Aggregation Consortium)MAPRE3 (select the gene name)
SNP (GeneSNP Utah)MAPRE3
SNP : HGBaseMAPRE3
Genetic variants : HAPMAPMAPRE3
Genomic Variants (DGV)MAPRE3 [DGVbeta]
Mutations
ICGC Data PortalMAPRE3 
TCGA Data PortalMAPRE3 
Broad Tumor PortalMAPRE3
OASIS PortalMAPRE3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAPRE3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAPRE3
DgiDB (Drug Gene Interaction Database)MAPRE3
DoCM (Curated mutations)MAPRE3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAPRE3 (select a term)
intoGenMAPRE3
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)2:27237622-27250087
CONAN: Copy Number AnalysisMAPRE3 
Mutations and Diseases : HGMDMAPRE3
OMIM605788   
MedgenMAPRE3
Genetic Testing Registry MAPRE3
NextProtQ9UPY8 [Medical]
TSGene22924
GENETestsMAPRE3
Huge Navigator MAPRE3 [HugePedia]  MAPRE3 [HugeCancerGEM]
snp3D : Map Gene to Disease22924
BioCentury BCIQMAPRE3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22924
Chemical/Pharm GKB GenePA30636
Clinical trialMAPRE3
Miscellaneous
canSAR (ICR)MAPRE3 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAPRE3
GoPubMedMAPRE3
iHOPMAPRE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 17:52:33 CEST 2016

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