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MAPT-IT1 (MAPT intronic transcript 1)

Identity

Alias_namesMAPT intronic transcript 1 (non-protein coding)
Other alias-
HGNC (Hugo) MAPT-IT1
LocusID (NCBI) 100130148
Atlas_Id 68803
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 45895783 and ends at 45898798 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAPT-IT1   43741
Cards
Entrez_Gene (NCBI)MAPT-IT1  100130148  MAPT intronic transcript 1
Aliases
GeneCards (Weizmann)MAPT-IT1
Ensembl hg19 (Hinxton)ENSG00000279685 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000279685 [Gene_View]  chr17:45895783-45898798 [Contig_View]  MAPT-IT1 [Vega]
ICGC DataPortalENSG00000279685
TCGA cBioPortalMAPT-IT1
AceView (NCBI)MAPT-IT1
Genatlas (Paris)MAPT-IT1
WikiGenes100130148
SOURCE (Princeton)MAPT-IT1
Genetics Home Reference (NIH)MAPT-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)MAPT-IT1  -     chr17:45895783-45898798 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAPT-IT1  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblMAPT-IT1 - 17q21.31 [CytoView hg19]  MAPT-IT1 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIMAPT-IT1 [Mapview hg19]  MAPT-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091698 BF108492 DA504438 DA789878
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_007398 NT_167251 NT_187663
Consensus coding sequences : CCDS (NCBI)MAPT-IT1
Cluster EST : UnigeneHs.669307 [ NCBI ]
CGAP (NCI)Hs.669307
Alternative Splicing GalleryENSG00000279685
Gene ExpressionMAPT-IT1 [ NCBI-GEO ]   MAPT-IT1 [ EBI - ARRAY_EXPRESS ]   MAPT-IT1 [ SEEK ]   MAPT-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAPT-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100130148
GTEX Portal (Tissue expression)MAPT-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MAPT-IT1
DMDM Disease mutations100130148
Blocks (Seattle)MAPT-IT1
Human Protein AtlasENSG00000279685
IPIIPI00168089   
Protein Interaction databases
FunCoupENSG00000279685
BioGRIDMAPT-IT1
STRING (EMBL)MAPT-IT1
ZODIACMAPT-IT1
Ontologies - Pathways
Huge Navigator MAPT-IT1 [HugePedia]
snp3D : Map Gene to Disease100130148
BioCentury BCIQMAPT-IT1
ClinGenMAPT-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130148
Clinical trialMAPT-IT1
Miscellaneous
canSAR (ICR)MAPT-IT1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAPT-IT1
EVEXMAPT-IT1
GoPubMedMAPT-IT1
iHOPMAPT-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:25:31 CEST 2017

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