Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MAPT (microtubule associated protein tau)

Identity

Other namesDDPAC
FTDP-17
MAPTL
MSTD
MTBT1
MTBT2
PPND
PPP1R103
TAU
HGNC (Hugo) MAPT
LocusID (NCBI) 4137
Atlas_Id 41299
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43971748 and ends at 44105699 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)		KANSL1 (17q21.31) / MAPT (17q21.31)MAPT (17q21.31) / MAPT (17q21.31)MAPT (17q21.31) / MARCH10 (17q23.2)
RAPGEFL1 (17q21.1) / MAPT (17q21.31)MAPT 17q21.31 / MARCH10 17q23.2RAPGEFL1 17q21.1 / MAPT 17q21.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MAPT   6893
Cards
Entrez_Gene (NCBI)MAPT  4137  microtubule associated protein tau
AliasesDDPAC; FTDP-17; MAPTL; MSTD; 
MTBT1; MTBT2; PPND; PPP1R103; TAU
GeneCards (Weizmann)MAPT
Ensembl hg19 (Hinxton)ENSG00000186868 [Gene_View]  chr17:43971748-44105699 [Contig_View]  MAPT [Vega]
Ensembl hg38 (Hinxton)ENSG00000186868 [Gene_View]  chr17:43971748-44105699 [Contig_View]  MAPT [Vega]
ICGC DataPortalENSG00000186868
TCGA cBioPortalMAPT
AceView (NCBI)MAPT
Genatlas (Paris)MAPT
WikiGenes4137
SOURCE (Princeton)MAPT
Genomic and cartography
GoldenPath hg19 (UCSC)MAPT  -     chr17:43971748-44105699 +  17q21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAPT  -     17q21.31   [Description]    (hg38-Dec_2013)
EnsemblMAPT - 17q21.31 [CytoView hg19]  MAPT - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIMAPT [Mapview hg19]  MAPT [Mapview hg38]
OMIM157140   168600   172700   260540   600274   601104   
Gene and transcription
Genbank (Entrez)AB073354 AF456477 AK055986 AK095802 AK226139
RefSeq transcript (Entrez)NM_001123066 NM_001123067 NM_001203251 NM_001203252 NM_005910 NM_016834 NM_016835 NM_016841
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_007398 NT_010783 NT_167251 NT_187663 NW_004929407
Consensus coding sequences : CCDS (NCBI)MAPT
Cluster EST : UnigeneHs.101174 [ NCBI ]
CGAP (NCI)Hs.101174
Alternative Splicing GalleryENSG00000186868
Gene ExpressionMAPT [ NCBI-GEO ]   MAPT [ EBI - ARRAY_EXPRESS ]   MAPT [ SEEK ]   MAPT [ MEM ]
Gene Expression Viewer (FireBrowse)MAPT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4137
GTEX Portal (Tissue expression)MAPT
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10636 (Uniprot)
NextProtP10636  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP10636
Splice isoforms : SwissVarP10636 (Swissvar)
PhosPhoSitePlusP10636
Domaine pattern : Prosite (Expaxy)TAU_MAP_1 (PS00229)    TAU_MAP_2 (PS51491)   
Domains : Interpro (EBI)MAP2/MAP4/Tau    MAP_tubulin-bd_rpt    Tau   
Domain families : Pfam (Sanger)Tubulin-binding (PF00418)   
Domain families : Pfam (NCBI)pfam00418   
DMDM Disease mutations4137
Blocks (Seattle)MAPT
PDB (SRS)1I8H    2MZ7    2ON9    3OVL    4E0M    4E0N    4E0O    4FL5    4GLR    4NP8    4TQE    4Y32    4Y3B    4Y5I    5DMG   
PDB (PDBSum)1I8H    2MZ7    2ON9    3OVL    4E0M    4E0N    4E0O    4FL5    4GLR    4NP8    4TQE    4Y32    4Y3B    4Y5I    5DMG   
PDB (IMB)1I8H    2MZ7    2ON9    3OVL    4E0M    4E0N    4E0O    4FL5    4GLR    4NP8    4TQE    4Y32    4Y3B    4Y5I    5DMG   
PDB (RSDB)1I8H    2MZ7    2ON9    3OVL    4E0M    4E0N    4E0O    4FL5    4GLR    4NP8    4TQE    4Y32    4Y3B    4Y5I    5DMG   
Structural Biology KnowledgeBase1I8H    2MZ7    2ON9    3OVL    4E0M    4E0N    4E0O    4FL5    4GLR    4NP8    4TQE    4Y32    4Y3B    4Y5I    5DMG   
SCOP (Structural Classification of Proteins)1I8H    2MZ7    2ON9    3OVL    4E0M    4E0N    4E0O    4FL5    4GLR    4NP8    4TQE    4Y32    4Y3B    4Y5I    5DMG   
CATH (Classification of proteins structures)1I8H    2MZ7    2ON9    3OVL    4E0M    4E0N    4E0O    4FL5    4GLR    4NP8    4TQE    4Y32    4Y3B    4Y5I    5DMG   
SuperfamilyP10636
Human Protein AtlasENSG00000186868
Peptide AtlasP10636
HPRD01142
IPIIPI00964662   IPI00220171   IPI00293683   IPI00220173   IPI00220174   IPI00026836   IPI00220175   IPI00025499   IPI00217976   IPI00043401   IPI01010378   IPI01009823   
Protein Interaction databases
DIP (DOE-UCLA)P10636
IntAct (EBI)P10636
FunCoupENSG00000186868
BioGRIDMAPT
STRING (EMBL)MAPT
ZODIACMAPT
Ontologies - Pathways
QuickGOP10636
Ontology : AmiGOmicrotubule cytoskeleton organization  neuron migration  structural constituent of cytoskeleton  protein binding  cytosol  microtubule  microtubule associated complex  plasma membrane  axoneme  brain development  female pregnancy  response to nutrient  adult walking behavior  microtubule binding  axo-dendritic transport  intrinsic apoptotic signaling pathway in response to oxidative stress  response to organic substance  regulation of autophagy  postsynaptic density  SH3 domain binding  enzyme binding  protein kinase binding  axon  dendrite  growth cone  regulation of microtubule polymerization  positive regulation of microtubule polymerization  negative regulation of intracellular transport  apolipoprotein binding  nuclear periphery  cytoplasmic ribonucleoprotein granule  cell body  tubulin complex  positive regulation of axon extension  mitochondrion transport along microtubule  axon extension  generation of neurons  protein phosphatase 2A binding  regulation of microtubule-based movement  lipoprotein particle binding  neurofibrillary tangle  
Ontology : EGO-EBImicrotubule cytoskeleton organization  neuron migration  structural constituent of cytoskeleton  protein binding  cytosol  microtubule  microtubule associated complex  plasma membrane  axoneme  brain development  female pregnancy  response to nutrient  adult walking behavior  microtubule binding  axo-dendritic transport  intrinsic apoptotic signaling pathway in response to oxidative stress  response to organic substance  regulation of autophagy  postsynaptic density  SH3 domain binding  enzyme binding  protein kinase binding  axon  dendrite  growth cone  regulation of microtubule polymerization  positive regulation of microtubule polymerization  negative regulation of intracellular transport  apolipoprotein binding  nuclear periphery  cytoplasmic ribonucleoprotein granule  cell body  tubulin complex  positive regulation of axon extension  mitochondrion transport along microtubule  axon extension  generation of neurons  protein phosphatase 2A binding  regulation of microtubule-based movement  lipoprotein particle binding  neurofibrillary tangle  
Pathways : KEGGMAPK signaling pathway    Alzheimer's disease   
NDEx NetworkMAPT
Atlas of Cancer Signalling NetworkMAPT
Wikipedia pathwaysMAPT
Orthology - Evolution
OrthoDB4137
GeneTree (enSembl)ENSG00000186868
Phylogenetic Trees/Animal Genes : TreeFamMAPT
Homologs : HomoloGeneMAPT
Homology/Alignments : Family Browser (UCSC)MAPT
Gene fusions - Rearrangements
Fusion: TCGAMAPT 17q21.31 MARCH10 17q23.2 BRCA
Fusion: TCGARAPGEFL1 17q21.1 MAPT 17q21.31 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerMAPT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAPT
dbVarMAPT
ClinVarMAPT
1000_GenomesMAPT 
Exome Variant ServerMAPT
ExAC (Exome Aggregation Consortium)MAPT (select the gene name)
Genetic variants : HAPMAP4137
Genomic Variants (DGV)MAPT [DGVbeta]
Mutations
ICGC Data PortalMAPT 
TCGA Data PortalMAPT 
Broad Tumor PortalMAPT
OASIS PortalMAPT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAPT 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MAPT
DgiDB (Drug Gene Interaction Database)MAPT
DoCM (Curated mutations)MAPT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAPT (select a term)
intoGenMAPT
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:43971748-44105699  ENSG00000186868
CONAN: Copy Number AnalysisMAPT 
Mutations and Diseases : HGMDMAPT
OMIM157140    168600    172700    260540    600274    601104   
MedgenMAPT
Genetic Testing Registry MAPT
NextProtP10636 [Medical]
TSGene4137
GENETestsMAPT
Huge Navigator MAPT [HugePedia]
snp3D : Map Gene to Disease4137
BioCentury BCIQMAPT
ClinGenMAPT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4137
Chemical/Pharm GKB GenePA238
Clinical trialMAPT
Miscellaneous
canSAR (ICR)MAPT (select the gene name)
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAPT
EVEXMAPT
GoPubMedMAPT
iHOPMAPT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 19 18:59:42 CEST 2016
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.