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MARCH9 (membrane-associated ring finger (C3HC4) 9)

Identity

Alias_namesmembrane-associated ring finger (C3HC4) 9
Alias_symbol (synonym)RNF179
FLJ36578
Other aliasMARCH-IX
HGNC (Hugo) MARCH9
LocusID (NCBI) 92979
Atlas_Id 68813
Location 12q14.1  [Link to chromosome band 12q14]
Location_base_pair Starts at 58148881 and ends at 58154193 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MARCH9 (12q14.1) / KCNC2 (12q21.1)MARCH9 (12q14.1) / MARCH9 (12q14.1)TSFM (12q14.1) / MARCH9 (12q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MARCH9   25139
Cards
Entrez_Gene (NCBI)MARCH9  92979  membrane-associated ring finger (C3HC4) 9
AliasesMARCH-IX; RNF179
GeneCards (Weizmann)MARCH9
Ensembl hg19 (Hinxton)ENSG00000139266 [Gene_View]  chr12:58148881-58154193 [Contig_View]  MARCH9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000139266 [Gene_View]  chr12:58148881-58154193 [Contig_View]  MARCH9 [Vega]
ICGC DataPortalENSG00000139266
TCGA cBioPortalMARCH9
AceView (NCBI)MARCH9
Genatlas (Paris)MARCH9
WikiGenes92979
SOURCE (Princeton)MARCH9
Genetics Home Reference (NIH)MARCH9
Genomic and cartography
GoldenPath hg19 (UCSC)MARCH9  -     chr12:58148881-58154193 +  12q14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MARCH9  -     12q14.1   [Description]    (hg38-Dec_2013)
EnsemblMARCH9 - 12q14.1 [CytoView hg19]  MARCH9 - 12q14.1 [CytoView hg38]
Mapping of homologs : NCBIMARCH9 [Mapview hg19]  MARCH9 [Mapview hg38]
OMIM613336   
Gene and transcription
Genbank (Entrez)AK093897 AK313925 BC009489 BC036455 BC050397
RefSeq transcript (Entrez)NM_138396
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)MARCH9
Cluster EST : UnigeneHs.632709 [ NCBI ]
CGAP (NCI)Hs.632709
Alternative Splicing GalleryENSG00000139266
Gene ExpressionMARCH9 [ NCBI-GEO ]   MARCH9 [ EBI - ARRAY_EXPRESS ]   MARCH9 [ SEEK ]   MARCH9 [ MEM ]
Gene Expression Viewer (FireBrowse)MARCH9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92979
GTEX Portal (Tissue expression)MARCH9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YJ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YJ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YJ5
Splice isoforms : SwissVarQ86YJ5
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.-6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
PhosPhoSitePlusQ86YJ5
Domaine pattern : Prosite (Expaxy)ZF_RING_CH (PS51292)   
Domains : Interpro (EBI)Znf_RING-CH    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)RINGv (PF12906)   
Domain families : Pfam (NCBI)pfam12906   
Domain families : Smart (EMBL)RINGv (SM00744)  
Conserved Domain (NCBI)MARCH9
DMDM Disease mutations92979
Blocks (Seattle)MARCH9
SuperfamilyQ86YJ5
Human Protein AtlasENSG00000139266
Peptide AtlasQ86YJ5
HPRD14360
IPIIPI00797080   IPI00395923   
Protein Interaction databases
DIP (DOE-UCLA)Q86YJ5
IntAct (EBI)Q86YJ5
FunCoupENSG00000139266
BioGRIDMARCH9
STRING (EMBL)MARCH9
ZODIACMARCH9
Ontologies - Pathways
QuickGOQ86YJ5
Ontology : AmiGOGolgi membrane  lysosomal membrane  Golgi stack  trans-Golgi network  zinc ion binding  integral component of membrane  protein ubiquitination  ligase activity  
Ontology : EGO-EBIGolgi membrane  lysosomal membrane  Golgi stack  trans-Golgi network  zinc ion binding  integral component of membrane  protein ubiquitination  ligase activity  
NDEx NetworkMARCH9
Atlas of Cancer Signalling NetworkMARCH9
Wikipedia pathwaysMARCH9
Orthology - Evolution
OrthoDB92979
GeneTree (enSembl)ENSG00000139266
Phylogenetic Trees/Animal Genes : TreeFamMARCH9
HOVERGENQ86YJ5
HOGENOMQ86YJ5
Homologs : HomoloGeneMARCH9
Homology/Alignments : Family Browser (UCSC)MARCH9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMARCH9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MARCH9
dbVarMARCH9
ClinVarMARCH9
1000_GenomesMARCH9 
Exome Variant ServerMARCH9
ExAC (Exome Aggregation Consortium)MARCH9 (select the gene name)
Genetic variants : HAPMAP92979
Genomic Variants (DGV)MARCH9 [DGVbeta]
DECIPHER (Syndromes)12:58148881-58154193  ENSG00000139266
CONAN: Copy Number AnalysisMARCH9 
Mutations
ICGC Data PortalMARCH9 
TCGA Data PortalMARCH9 
Broad Tumor PortalMARCH9
OASIS PortalMARCH9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMARCH9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMARCH9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MARCH9
DgiDB (Drug Gene Interaction Database)MARCH9
DoCM (Curated mutations)MARCH9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MARCH9 (select a term)
intoGenMARCH9
Cancer3DMARCH9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613336   
Orphanet
MedgenMARCH9
Genetic Testing Registry MARCH9
NextProtQ86YJ5 [Medical]
TSGene92979
GENETestsMARCH9
Huge Navigator MARCH9 [HugePedia]
snp3D : Map Gene to Disease92979
BioCentury BCIQMARCH9
ClinGenMARCH9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92979
Chemical/Pharm GKB GenePA134920045
Clinical trialMARCH9
Miscellaneous
canSAR (ICR)MARCH9 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMARCH9
EVEXMARCH9
GoPubMedMARCH9
iHOPMARCH9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:44 CET 2017

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