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MARCO (macrophage receptor with collagenous structure)

Identity

Alias_symbol (synonym)SCARA2
Other alias
HGNC (Hugo) MARCO
LocusID (NCBI) 8685
Atlas_Id 68814
Location 2q14.2  [Link to chromosome band 2q14]
Location_base_pair Starts at 119699745 and ends at 119752236 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MARCO   6895
Cards
Entrez_Gene (NCBI)MARCO  8685  macrophage receptor with collagenous structure
AliasesSCARA2
GeneCards (Weizmann)MARCO
Ensembl hg19 (Hinxton)ENSG00000019169 [Gene_View]  chr2:119699745-119752236 [Contig_View]  MARCO [Vega]
Ensembl hg38 (Hinxton)ENSG00000019169 [Gene_View]  chr2:119699745-119752236 [Contig_View]  MARCO [Vega]
ICGC DataPortalENSG00000019169
TCGA cBioPortalMARCO
AceView (NCBI)MARCO
Genatlas (Paris)MARCO
WikiGenes8685
SOURCE (Princeton)MARCO
Genetics Home Reference (NIH)MARCO
Genomic and cartography
GoldenPath hg19 (UCSC)MARCO  -     chr2:119699745-119752236 +  2q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MARCO  -     2q14.2   [Description]    (hg38-Dec_2013)
EnsemblMARCO - 2q14.2 [CytoView hg19]  MARCO - 2q14.2 [CytoView hg38]
Mapping of homologs : NCBIMARCO [Mapview hg19]  MARCO [Mapview hg38]
OMIM604870   
Gene and transcription
Genbank (Entrez)AF035819 AK297030 AK301407 AK313139 BC016004
RefSeq transcript (Entrez)NM_006770
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929304
Consensus coding sequences : CCDS (NCBI)MARCO
Cluster EST : UnigeneHs.67726 [ NCBI ]
CGAP (NCI)Hs.67726
Alternative Splicing GalleryENSG00000019169
Gene ExpressionMARCO [ NCBI-GEO ]   MARCO [ EBI - ARRAY_EXPRESS ]   MARCO [ SEEK ]   MARCO [ MEM ]
Gene Expression Viewer (FireBrowse)MARCO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8685
GTEX Portal (Tissue expression)MARCO
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UEW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UEW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UEW3
Splice isoforms : SwissVarQ9UEW3
PhosPhoSitePlusQ9UEW3
Domaine pattern : Prosite (Expaxy)SRCR_1 (PS00420)    SRCR_2 (PS50287)   
Domains : Interpro (EBI)Collagen    SRCR    SRCR-like_dom   
Domain families : Pfam (Sanger)Collagen (PF01391)    SRCR (PF00530)   
Domain families : Pfam (NCBI)pfam01391    pfam00530   
Domain families : Smart (EMBL)SR (SM00202)  
Conserved Domain (NCBI)MARCO
DMDM Disease mutations8685
Blocks (Seattle)MARCO
SuperfamilyQ9UEW3
Human Protein AtlasENSG00000019169
Peptide AtlasQ9UEW3
HPRD05337
IPIIPI00009521   IPI00917216   IPI00916165   
Protein Interaction databases
DIP (DOE-UCLA)Q9UEW3
IntAct (EBI)Q9UEW3
FunCoupENSG00000019169
BioGRIDMARCO
STRING (EMBL)MARCO
ZODIACMARCO
Ontologies - Pathways
QuickGOQ9UEW3
Ontology : AmiGOpattern recognition receptor signaling pathway  transmembrane signaling receptor activity  scavenger receptor activity  collagen trimer  plasma membrane  integral component of plasma membrane  receptor-mediated endocytosis  cell surface receptor signaling pathway  signaling pattern recognition receptor activity  endocytic vesicle membrane  apoptotic cell clearance  innate immune response  
Ontology : EGO-EBIpattern recognition receptor signaling pathway  transmembrane signaling receptor activity  scavenger receptor activity  collagen trimer  plasma membrane  integral component of plasma membrane  receptor-mediated endocytosis  cell surface receptor signaling pathway  signaling pattern recognition receptor activity  endocytic vesicle membrane  apoptotic cell clearance  innate immune response  
Pathways : KEGGPhagosome   
NDEx NetworkMARCO
Atlas of Cancer Signalling NetworkMARCO
Wikipedia pathwaysMARCO
Orthology - Evolution
OrthoDB8685
GeneTree (enSembl)ENSG00000019169
Phylogenetic Trees/Animal Genes : TreeFamMARCO
HOVERGENQ9UEW3
HOGENOMQ9UEW3
Homologs : HomoloGeneMARCO
Homology/Alignments : Family Browser (UCSC)MARCO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMARCO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MARCO
dbVarMARCO
ClinVarMARCO
1000_GenomesMARCO 
Exome Variant ServerMARCO
ExAC (Exome Aggregation Consortium)MARCO (select the gene name)
Genetic variants : HAPMAP8685
Genomic Variants (DGV)MARCO [DGVbeta]
DECIPHER (Syndromes)2:119699745-119752236  ENSG00000019169
CONAN: Copy Number AnalysisMARCO 
Mutations
ICGC Data PortalMARCO 
TCGA Data PortalMARCO 
Broad Tumor PortalMARCO
OASIS PortalMARCO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMARCO  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMARCO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)TBsLVD Tuberculosis susceptibility Locus Variation Database
BioMutasearch MARCO
DgiDB (Drug Gene Interaction Database)MARCO
DoCM (Curated mutations)MARCO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MARCO (select a term)
intoGenMARCO
Cancer3DMARCO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604870   
Orphanet
MedgenMARCO
Genetic Testing Registry MARCO
NextProtQ9UEW3 [Medical]
TSGene8685
GENETestsMARCO
Huge Navigator MARCO [HugePedia]
snp3D : Map Gene to Disease8685
BioCentury BCIQMARCO
ClinGenMARCO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8685
Chemical/Pharm GKB GenePA30638
Clinical trialMARCO
Miscellaneous
canSAR (ICR)MARCO (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMARCO
EVEXMARCO
GoPubMedMARCO
iHOPMARCO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:44 CET 2017

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