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MARF1 (meiosis regulator and mRNA stability factor 1)

Identity

Other aliasKIAA0430
LKAP
LMKB
PPP1R34
HGNC (Hugo) MARF1
LocusID (NCBI) 9665
Atlas_Id 56813
Location 16p13.11  [Link to chromosome band 16p13]
Location_base_pair Starts at 15594369 and ends at 15643166 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABAT 16p13.2 / KIAA0430 16p13.11KIAA0430 16p13.11 / IQCK 16p12.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MARF1   29562
Cards
Entrez_Gene (NCBI)MARF1  9665  meiosis regulator and mRNA stability factor 1
AliasesKIAA0430; LKAP; LMKB; PPP1R34
GeneCards (Weizmann)MARF1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:15594369-15643166 [Contig_View]  MARF1 [Vega]
TCGA cBioPortalMARF1
AceView (NCBI)MARF1
Genatlas (Paris)MARF1
WikiGenes9665
SOURCE (Princeton)MARF1
Genetics Home Reference (NIH)MARF1
Genomic and cartography
GoldenPath hg38 (UCSC)MARF1  -     chr16:15594369-15643166 -  16p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MARF1  -     16p13.11   [Description]    (hg19-Feb_2009)
EnsemblMARF1 - 16p13.11 [CytoView hg19]  MARF1 - 16p13.11 [CytoView hg38]
Mapping of homologs : NCBIMARF1 [Mapview hg19]  MARF1 [Mapview hg38]
OMIM614593   
Gene and transcription
Genbank (Entrez)AB007890 AB012134 AK095840 AK124564 AK302667
RefSeq transcript (Entrez)NM_001184998 NM_001184999 NM_014647 NM_019081
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_021407 NT_187607
Consensus coding sequences : CCDS (NCBI)MARF1
Cluster EST : UnigeneHs.173524 [ NCBI ]
CGAP (NCI)Hs.173524
Gene ExpressionMARF1 [ NCBI-GEO ]   MARF1 [ EBI - ARRAY_EXPRESS ]   MARF1 [ SEEK ]   MARF1 [ MEM ]
Gene Expression Viewer (FireBrowse)MARF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9665
GTEX Portal (Tissue expression)MARF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4F3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4F3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4F3
Splice isoforms : SwissVarQ9Y4F3
PhosPhoSitePlusQ9Y4F3
Domaine pattern : Prosite (Expaxy)HTH_OST (PS51644)    RRM (PS50102)   
Domains : Interpro (EBI)Marf1    Marf1_cons_dom    Marf1_RRM1    Marf1_RRM2    Nucleotide-bd_a/b_plait    NYN_limkain-b1    OST-HTH/LOTUS_dom    PIN_domain-like    RRM_dom   
Domain families : Pfam (Sanger)Limkain-b1 (PF11608)    NYN (PF01936)    OST-HTH (PF12872)   
Domain families : Pfam (NCBI)pfam11608    pfam01936    pfam12872   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)MARF1
DMDM Disease mutations9665
Blocks (Seattle)MARF1
PDB (SRS)2DGX    2DIU   
PDB (PDBSum)2DGX    2DIU   
PDB (IMB)2DGX    2DIU   
PDB (RSDB)2DGX    2DIU   
Structural Biology KnowledgeBase2DGX    2DIU   
SCOP (Structural Classification of Proteins)2DGX    2DIU   
CATH (Classification of proteins structures)2DGX    2DIU   
SuperfamilyQ9Y4F3
Peptide AtlasQ9Y4F3
IPIIPI00828177   IPI01022424   IPI00941715   IPI00005146   IPI01021383   IPI01026042   IPI01021640   IPI01022101   IPI00942855   IPI00375814   IPI00792904   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4F3
IntAct (EBI)Q9Y4F3
BioGRIDMARF1
STRING (EMBL)MARF1
ZODIACMARF1
Ontologies - Pathways
QuickGOQ9Y4F3
Ontology : AmiGOmolecular_function  RNA binding  peroxisome  Golgi apparatus  double-strand break repair  female meiotic nuclear division  regulation of gene expression  negative regulation of phosphatase activity  membrane  intracellular membrane-bounded organelle  oogenesis  
Ontology : EGO-EBImolecular_function  RNA binding  peroxisome  Golgi apparatus  double-strand break repair  female meiotic nuclear division  regulation of gene expression  negative regulation of phosphatase activity  membrane  intracellular membrane-bounded organelle  oogenesis  
NDEx NetworkMARF1
Atlas of Cancer Signalling NetworkMARF1
Wikipedia pathwaysMARF1
Orthology - Evolution
OrthoDB9665
Phylogenetic Trees/Animal Genes : TreeFamMARF1
HOVERGENQ9Y4F3
HOGENOMQ9Y4F3
Homologs : HomoloGeneMARF1
Homology/Alignments : Family Browser (UCSC)MARF1
Gene fusions - Rearrangements
Fusion : MitelmanABAT/KIAA0430 [16p13.2/16p13.11]  [t(16;16)(p13;p13)]  
Fusion : MitelmanKIAA0430/IQCK [16p13.11/16p12.3]  [t(16;16)(p12;p13)]  
Fusion: TCGAABAT 16p13.2 KIAA0430 16p13.11 LGG
Fusion: TCGAKIAA0430 16p13.11 IQCK 16p12.3 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMARF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MARF1
dbVarMARF1
ClinVarMARF1
1000_GenomesMARF1 
Exome Variant ServerMARF1
ExAC (Exome Aggregation Consortium)MARF1 (select the gene name)
Genetic variants : HAPMAP9665
Genomic Variants (DGV)MARF1 [DGVbeta]
DECIPHERMARF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMARF1 
Mutations
ICGC Data PortalMARF1 
TCGA Data PortalMARF1 
Broad Tumor PortalMARF1
OASIS PortalMARF1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMARF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MARF1
DgiDB (Drug Gene Interaction Database)MARF1
DoCM (Curated mutations)MARF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MARF1 (select a term)
intoGenMARF1
Cancer3DMARF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614593   
Orphanet
MedgenMARF1
Genetic Testing Registry MARF1
NextProtQ9Y4F3 [Medical]
TSGene9665
GENETestsMARF1
Target ValidationMARF1
Huge Navigator MARF1 [HugePedia]
snp3D : Map Gene to Disease9665
BioCentury BCIQMARF1
ClinGenMARF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9665
Chemical/Pharm GKB GenePA145148631
Clinical trialMARF1
Miscellaneous
canSAR (ICR)MARF1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMARF1
EVEXMARF1
GoPubMedMARF1
iHOPMARF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:17:18 CEST 2017

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