Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MASCRNA (MALAT1-associated small cytoplasmic RNA)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 109136578
Atlas_Id 79045
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65506117 and ends at 65506174 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)MASCRNA  109136578  MALAT1-associated small cytoplasmic RNA
Aliases
GeneCards (Weizmann)MASCRNA
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:65506117-65506174 [Contig_View]  MASCRNA [Vega]
TCGA cBioPortalMASCRNA
AceView (NCBI)MASCRNA
Genatlas (Paris)MASCRNA
WikiGenes109136578
SOURCE (Princeton)MASCRNA
Genetics Home Reference (NIH)MASCRNA
Genomic and cartography
GoldenPath hg38 (UCSC)MASCRNA  -     chr11:65506117-65506174 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MASCRNA  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblMASCRNA - 11q13.1 [CytoView hg19]  MASCRNA - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIMASCRNA [Mapview hg19]  MASCRNA [Mapview hg38]
Gene and transcription
Genbank (Entrez)FJ209302
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MASCRNA
Gene ExpressionMASCRNA [ NCBI-GEO ]   MASCRNA [ EBI - ARRAY_EXPRESS ]   MASCRNA [ SEEK ]   MASCRNA [ MEM ]
Gene Expression Viewer (FireBrowse)MASCRNA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109136578
GTEX Portal (Tissue expression)MASCRNA
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MASCRNA
DMDM Disease mutations109136578
Blocks (Seattle)MASCRNA
Protein Interaction databases
BioGRIDMASCRNA
STRING (EMBL)MASCRNA
ZODIACMASCRNA
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease109136578
BioCentury BCIQMASCRNA
ClinGenMASCRNA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109136578
Clinical trialMASCRNA
Miscellaneous
canSAR (ICR)MASCRNA (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMASCRNA
EVEXMASCRNA
GoPubMedMASCRNA
iHOPMASCRNA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:26:59 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.