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MATN4 (matrilin 4)

Identity

Other alias-
HGNC (Hugo) MATN4
LocusID (NCBI) 8785
Atlas_Id 68821
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45293446 and ends at 45308529 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MATN4   6910
Cards
Entrez_Gene (NCBI)MATN4  8785  matrilin 4
Aliases
GeneCards (Weizmann)MATN4
Ensembl hg19 (Hinxton)ENSG00000124159 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124159 [Gene_View]  chr20:45293446-45308529 [Contig_View]  MATN4 [Vega]
ICGC DataPortalENSG00000124159
TCGA cBioPortalMATN4
AceView (NCBI)MATN4
Genatlas (Paris)MATN4
WikiGenes8785
SOURCE (Princeton)MATN4
Genetics Home Reference (NIH)MATN4
Genomic and cartography
GoldenPath hg38 (UCSC)MATN4  -     chr20:45293446-45308529 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MATN4  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblMATN4 - 20q13.12 [CytoView hg19]  MATN4 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIMATN4 [Mapview hg19]  MATN4 [Mapview hg38]
OMIM603897   
Gene and transcription
Genbank (Entrez)AJ007581 AK027323 AK074495 AK074593 AK074595
RefSeq transcript (Entrez)NM_003833 NM_030590 NM_030592
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MATN4
Cluster EST : UnigeneHs.278489 [ NCBI ]
CGAP (NCI)Hs.278489
Alternative Splicing GalleryENSG00000124159
Gene ExpressionMATN4 [ NCBI-GEO ]   MATN4 [ EBI - ARRAY_EXPRESS ]   MATN4 [ SEEK ]   MATN4 [ MEM ]
Gene Expression Viewer (FireBrowse)MATN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8785
GTEX Portal (Tissue expression)MATN4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95460   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95460  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95460
Splice isoforms : SwissVarO95460
PhosPhoSitePlusO95460
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_2 (PS01186)    EGF_3 (PS50026)    VWFA (PS50234)   
Domains : Interpro (EBI)cEGF    EGF-like_Ca-bd_dom    EGF-like_CS    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    Growth_fac_rcpt_    Matrilin-4    Matrilin_coiled-coil_trimer    VWF_A   
Domain families : Pfam (Sanger)cEGF (PF12662)    Matrilin_ccoil (PF10393)    VWA (PF00092)   
Domain families : Pfam (NCBI)pfam12662    pfam10393    pfam00092   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_CA (SM00179)  Matrilin_ccoil (SM01279)  VWA (SM00327)  
Conserved Domain (NCBI)MATN4
DMDM Disease mutations8785
Blocks (Seattle)MATN4
SuperfamilyO95460
Human Protein AtlasENSG00000124159
Peptide AtlasO95460
HPRD04873
IPIIPI00030786   IPI00021939   IPI00749485   IPI00296214   IPI00012325   
Protein Interaction databases
DIP (DOE-UCLA)O95460
IntAct (EBI)O95460
FunCoupENSG00000124159
BioGRIDMATN4
STRING (EMBL)MATN4
ZODIACMATN4
Ontologies - Pathways
QuickGOO95460
Ontology : AmiGOcalcium ion binding  protein binding  extracellular region  extracellular matrix organization  
Ontology : EGO-EBIcalcium ion binding  protein binding  extracellular region  extracellular matrix organization  
NDEx NetworkMATN4
Atlas of Cancer Signalling NetworkMATN4
Wikipedia pathwaysMATN4
Orthology - Evolution
OrthoDB8785
GeneTree (enSembl)ENSG00000124159
Phylogenetic Trees/Animal Genes : TreeFamMATN4
HOVERGENO95460
HOGENOMO95460
Homologs : HomoloGeneMATN4
Homology/Alignments : Family Browser (UCSC)MATN4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMATN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MATN4
dbVarMATN4
ClinVarMATN4
1000_GenomesMATN4 
Exome Variant ServerMATN4
ExAC (Exome Aggregation Consortium)MATN4 (select the gene name)
Genetic variants : HAPMAP8785
Genomic Variants (DGV)MATN4 [DGVbeta]
DECIPHERMATN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMATN4 
Mutations
ICGC Data PortalMATN4 
TCGA Data PortalMATN4 
Broad Tumor PortalMATN4
OASIS PortalMATN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMATN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMATN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MATN4
DgiDB (Drug Gene Interaction Database)MATN4
DoCM (Curated mutations)MATN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MATN4 (select a term)
intoGenMATN4
Cancer3DMATN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603897   
Orphanet
MedgenMATN4
Genetic Testing Registry MATN4
NextProtO95460 [Medical]
TSGene8785
GENETestsMATN4
Target ValidationMATN4
Huge Navigator MATN4 [HugePedia]
snp3D : Map Gene to Disease8785
BioCentury BCIQMATN4
ClinGenMATN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8785
Chemical/Pharm GKB GenePA30653
Clinical trialMATN4
Miscellaneous
canSAR (ICR)MATN4 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMATN4
EVEXMATN4
GoPubMedMATN4
iHOPMATN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:35 CEST 2017

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